A Python package to fetch protein sequences from UniProtKB using its REST API.
Project description
Uniseq
UniSeq is a Python package that allows you to fetch protein sequences directly from the UniProtKB database using its REST API. This package can help in automating workflows that dynamically scrapes protein sequences from the database.
Installation
pip install uniseq
Usage
from uniseq import getseq
sequence = getseq("P69905") # any valid UniProtKB ID can be passed
print(sequence)
Dependencies
- requests
- biopython
These are automatically installed when you install the package.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file uniseq-0.0.2.tar.gz.
File metadata
- Download URL: uniseq-0.0.2.tar.gz
- Upload date:
- Size: 2.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.12.1.2 readme-renderer/44.0 requests/2.32.3 requests-toolbelt/1.0.0 urllib3/2.2.3 tqdm/4.66.5 importlib-metadata/8.6.1 keyring/25.6.0 rfc3986/2.0.0 colorama/0.4.6 CPython/3.12.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
144f8acf432d0cb0195fd0f0d6e0f6be40c156163de20114574e95b20fb9ffe5
|
|
| MD5 |
8a88369fa04087e2d4bdc88bcf5915e9
|
|
| BLAKE2b-256 |
14ba621a2506d8e7db23a4c1b841fe260b613fa72a662b6f983478cc16857f61
|
File details
Details for the file uniseq-0.0.2-py3-none-any.whl.
File metadata
- Download URL: uniseq-0.0.2-py3-none-any.whl
- Upload date:
- Size: 3.2 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.12.1.2 readme-renderer/44.0 requests/2.32.3 requests-toolbelt/1.0.0 urllib3/2.2.3 tqdm/4.66.5 importlib-metadata/8.6.1 keyring/25.6.0 rfc3986/2.0.0 colorama/0.4.6 CPython/3.12.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
540314ca3aa23c6aafee41059b5d69ef5117ab4693280ee8335779c9e0543f28
|
|
| MD5 |
9f82676170469b99739185b3fac8ec5f
|
|
| BLAKE2b-256 |
acf6c4f42782ab917072211323469e989410e52eecbb1bcb0c9fea6ccad92206
|