DNA — Dynamic Nonlinear Adaptive time series forecaster and audience segmentation toolkit
Project description
universitybox
DNA — Dynamic Nonlinear Adaptive Time Series Forecaster
A pure-NumPy/SciPy time series forecasting library built around the DNA model — a three-stage hierarchical forecaster that combines classical decomposition, nonlinear basis expansion, and adaptive Kalman filtering.
No TensorFlow. No PyTorch. No black boxes. Every equation is documented.
Install
pip install universitybox
With optional extras:
pip install "universitybox[full]" # + pandas + matplotlib
pip install "universitybox[viz]" # + matplotlib only
pip install "universitybox[data]" # + pandas only
Quick start
import numpy as np
from universitybox import DNA
# Any 1-D time series
y = np.array([112, 118, 132, 129, 121, 135, 148, 148, 136, 119,
104, 118, 115, 126, 141, 135, 125, 149, 170, 170,
158, 133, 114, 140, 145, 150, 178, 163, 172, 178,
199, 199, 184, 162, 146, 166, 171, 180, 193, 181])
model = DNA(period=12)
model.fit(y)
point_forecast = model.forecast(h=12)
lower, upper = model.predict_interval(h=12, level=0.95)
metrics = model.evaluate(y[-6:]) # held-out test
model.summary()
The DNA Model
DNA decomposes the time series into three progressively finer layers:
y_t = μ_t (D-stage: trend via Henderson filter)
+ s_t (D-stage: seasonal via Fourier OLS)
+ f(Φ(x_t)) (N-stage: nonlinear correction via Ridge + RBF)
+ ℓ_t (A-stage: adaptive correction via Kalman LLT)
+ η_t (irreducible noise)
Each stage is fit on the residual of the previous stage. Final forecast = inverse-variance weighted combination of all four components.
Full mathematical derivation (Henderson weights, RKHS interpretation, Kalman recursion, MLE, consistency proofs): see MATH.md.
All parameters
DNA(
period = "auto", # int or 'auto' — seasonal period (e.g. 4, 12, 7)
trend_window = "auto", # Henderson filter half-length m
n_fourier = 3, # Fourier harmonics K
poly_degree = 2, # polynomial degree for N-stage feature map
n_lags = 4, # AR lags for N-stage feature map
n_rbf = 10, # RBF centres (k-means++ selected)
rbf_gamma = "auto", # RBF bandwidth γ ('auto' = median heuristic)
ridge_alpha = 1e-3, # L2 regularisation λ
kalman_q_level= 1e-4, # Kalman level process noise
kalman_q_slope= 1e-6, # Kalman slope process noise
kalman_obs_var= 1e-2, # Kalman observation noise
kalman_mle = False, # estimate Kalman noise by MLE
ensemble = "iv", # 'iv' | 'equal' | 'ols'
ci_method = "analytical", # 'analytical' | 'bootstrap'
ci_bootstrap_n= 500, # bootstrap replications
random_state = None, # reproducibility seed
)
API reference
DNA.fit(y)
Fit the model. y must be a 1-D array with ≥ 4 observations and no NaN/Inf.
DNA.forecast(h)
Return point forecasts for horizons 1 … h.
DNA.predict_interval(h, level=0.95)
Return (lower, upper) prediction interval arrays of length h.
DNA.evaluate(y_test)
Compute MAE, RMSE, MAPE, sMAPE, MASE against a held-out test set.
DNA.fitted_values
In-sample fitted values ŷ₁, ..., ŷₙ.
DNA.residuals
In-sample residuals y − ŷ.
DNA.components
Dict of in-sample arrays: trend, seasonal, nonlinear, adaptive.
DNA.weights
Ensemble weights α, β, γ, δ for each component.
DNA.summary()
Print a human-readable model card.
Metrics
from universitybox import metrics
metrics.mae(y_true, y_pred)
metrics.rmse(y_true, y_pred)
metrics.mape(y_true, y_pred)
metrics.smape(y_true, y_pred)
metrics.mase(y_true, y_pred, y_train=y_train, period=4)
metrics.crps_gaussian(y_true, mu=fc, sigma=sigma_h)
metrics.summary(y_true, y_pred) # dict of all metrics
Audience segmentation
from universitybox.segments import Club
category_map = {
"lenovo": "Technology",
"hp store": "Technology",
"samsung": "Technology",
"zara": "Fashion",
"zalando": "Fashion",
}
club = Club(category_map=category_map, min_cta=6)
club.fit(events_df) # DataFrame with columns: user_id, brand, cta_count
print(club.size("Technology")) # number of members
print(club.share("Technology")) # fraction of classified users
print(club.summary()) # all clubs with size + share
tech_users = club.members("Technology") # list of user_ids
Design principles
- Pure NumPy/SciPy — no heavy ML framework required
- Minimal dependencies —
numpy+scipyonly for the core forecaster - Fully documented math — every formula in the code has an equation tag in
MATH.md - sklearn-compatible interface —
fit/forecast/score - Typed —
py.typedmarker, full type annotations - Tested — 22 unit tests covering all components, edge cases, and metrics
Contributing
- Fork the repository
- Create a feature branch:
git checkout -b feature/my-feature - Install dev dependencies:
pip install -e ".[dev]" - Run tests:
pytest tests/ -v - Open a pull request
All contributions welcome — new forecasters (implement BaseForecaster), new metrics, new segmentation methods.
Citation
If you use this package in research, please cite:
@software{universitybox2026,
author = {UniversityBox Data Team},
title = {universitybox: DNA Dynamic Nonlinear Adaptive Forecaster},
year = {2026},
url = {https://github.com/universitybox/universitybox-pkg},
version = {0.1.0}
}
License
MIT — see LICENSE.
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