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Transparent pandas performance optimization via Numba-accelerated parallel operations

Project description

unlockedpd

Unlock pandas performance with zero code changes.

PyPI version Python 3.9+ License: MIT

unlockedpd is a drop-in performance booster for pandas that achieves 5-15x speedups on rolling, expanding, EWM, and cumulative operations. Just import unlockedpd after pandas and your existing code runs faster.

import pandas as pd
import unlockedpd  # That's it. Your pandas code is now faster.

df = pd.DataFrame(...)
df.rolling(20).mean()  # 5x faster!
df.expanding().max()   # 15x faster!
df.ewm(span=20).mean() # 4.8x faster!

Why unlockedpd?

Library Speedup pandas Compatible Setup Required
unlockedpd 8.7x avg 100% pip install
Polars 5-10x 0% (new API) Learn new API
Modin ~4x 95% Ray/Dask cluster

Key advantages:

  • Zero code changes: Works with your existing pandas code
  • No infrastructure: No Ray, no Dask, no distributed setup
  • No new API to learn: It's still pandas
  • Automatic fallback: Falls back to pandas for unsupported cases

Benchmarks

Tested on a 64-core machine with a 0.8GB DataFrame (10,000 rows x 10,000 columns):

Rolling Operations (8.4x average)

Operation pandas unlockedpd Speedup
rolling(20).mean() 1.96s 0.39s 5.0x
rolling(20).sum() 1.78s 0.18s 9.7x
rolling(20).std() 2.51s 0.40s 6.3x
rolling(20).var() 2.36s 0.40s 5.9x
rolling(20).min() 3.30s 0.28s 11.6x
rolling(20).max() 3.36s 0.29s 11.6x

Expanding Operations (10.7x average)

Operation pandas unlockedpd Speedup
expanding().mean() 1.55s 0.20s 7.9x
expanding().sum() 1.46s 0.18s 8.3x
expanding().std() 1.89s 0.20s 9.6x
expanding().var() 1.65s 0.18s 9.1x
expanding().min() 2.61s 0.18s 14.3x
expanding().max() 2.69s 0.18s 15.1x

EWM Operations (5.3x average)

Operation pandas unlockedpd Speedup
ewm(span=20).mean() 1.18s 0.25s 4.8x
ewm(span=20).std() 1.51s 0.37s 4.0x
ewm(span=20).var() 1.31s 0.19s 7.1x

Cumulative Operations (3.2x average)

Operation pandas unlockedpd Speedup
cumsum() 0.59s 0.19s 3.2x
cummin() 0.58s 0.18s 3.2x
cummax() 0.58s 0.19s 3.1x

Other Operations

Operation Speedup
pct_change() 11x
rank(axis=1) 8-10x
rank(axis=0) 1.4-1.5x
diff() 1.0-1.7x
shift() 1.0-1.5x

Installation

pip install unlockedpd

Requirements:

  • Python 3.9+
  • pandas >= 1.5
  • numba >= 0.56
  • numpy >= 1.21

Usage

Basic Usage

import pandas as pd
import unlockedpd  # Import after pandas

# Your existing code works unchanged
df = pd.DataFrame(np.random.randn(10000, 1000))
result = df.rolling(20).mean()  # Automatically optimized!

Configuration

import unlockedpd

# Disable optimizations temporarily
unlockedpd.config.enabled = False

# Set thread count (default: min(cpu_count, 32))
unlockedpd.config.num_threads = 16

# Enable warnings when falling back to pandas
unlockedpd.config.warn_on_fallback = True

# Set minimum elements for parallel execution
unlockedpd.config.parallel_threshold = 500_000

Environment Variables

export UNLOCKEDPD_ENABLED=false
export UNLOCKEDPD_NUM_THREADS=16
export UNLOCKEDPD_WARN_ON_FALLBACK=true
export UNLOCKEDPD_PARALLEL_THRESHOLD=500000

Temporarily Disable

from unlockedpd import _PatchRegistry

with _PatchRegistry.temporarily_unpatched():
    # Uses original pandas here
    result = df.rolling(20).mean()

How It Works

unlockedpd achieves its speedups through:

  1. Numba JIT compilation: Operations are compiled to optimized machine code
  2. nogil=True: Releases Python's GIL during computation
  3. ThreadPoolExecutor: Achieves true parallelism across CPU cores
  4. Column-wise chunking: Distributes work efficiently across threads

The key insight: @njit(nogil=True) + ThreadPoolExecutor combines Numba's fast compiled loops with true multi-threaded parallelism.

┌─────────────────────────────────────────────────────────────┐
│                    ThreadPoolExecutor                        │
│  ┌─────────┐  ┌─────────┐  ┌─────────┐       ┌─────────┐   │
│  │ Thread 1│  │ Thread 2│  │ Thread 3│  ...  │Thread 32│   │
│  │ Cols 0-k│  │Cols k-2k│  │Cols 2k..│       │Cols ..N │   │
│  │ (nogil) │  │ (nogil) │  │ (nogil) │       │ (nogil) │   │
│  └─────────┘  └─────────┘  └─────────┘       └─────────┘   │
└─────────────────────────────────────────────────────────────┘

What's Optimized

Fully optimized (5-15x faster):

  • rolling().mean(), sum(), std(), var(), min(), max(), count(), skew(), kurt(), median(), quantile()
  • expanding().mean(), sum(), std(), var(), min(), max(), count(), skew(), kurt()
  • ewm().mean(), std(), var()
  • cumsum(), cumprod(), cummin(), cummax()
  • rank() (both axis=0 and axis=1)
  • pct_change(), diff(), shift()
  • rolling().corr(), rolling().cov() (pairwise)

Passes through to pandas (unchanged):

  • rolling().apply() (custom functions)
  • Series operations (optimizations target DataFrames)
  • Non-numeric columns (auto-fallback)

Compatibility

unlockedpd is designed for 100% pandas compatibility:

  • Drop-in replacement: No code changes required
  • Automatic fallback: If optimization fails, falls back to pandas
  • Type preservation: Returns same types as pandas
  • Index preservation: Maintains DataFrame/Series indices
  • NaN handling: Correctly handles missing values

Comparison with Alternatives

vs Polars

Aspect unlockedpd Polars
Speedup 8.7x avg 5-10x
API pandas (unchanged) New API to learn
Code changes None Rewrite required
Ecosystem pandas ecosystem Polars ecosystem

vs Modin

Aspect unlockedpd Modin
Speedup 8.7x avg ~4x (general)
Rolling ops 8.4x optimized Not optimized
Infrastructure None Ray/Dask cluster
Memory Low overhead Partitioning overhead

vs Vanilla Numba

Aspect unlockedpd Manual Numba
Usage import unlockedpd Write custom kernels
GIL handling Automatic (nogil=True) Manual
Parallelization Automatic ThreadPool Manual implementation

Running Benchmarks

# Clone the repo
git clone https://github.com/Yeachan-Heo/unlockedpd
cd unlockedpd

# Install with dev dependencies
pip install -e ".[dev]"

# Run benchmarks
pytest benchmarks/ -v

Contributing

Contributions are welcome! Areas of interest:

  • Additional operation optimizations
  • Performance improvements
  • Documentation and examples
  • Bug reports and fixes

Changelog

v0.2.2 (2026-01-21)

100% Pandas Compatibility Fixes:

  • Fixed pct_change() division by zero - Now correctly returns inf/-inf when dividing by zero (previously returned NaN)
  • Fixed rolling skew() and kurt() - Corrected bias correction formulas to match pandas exactly
  • Fixed expanding skew() and kurt() - Corrected bias correction formulas to match pandas exactly
  • Fixed zero variance handling - Rolling/expanding skew returns 0.0, kurt returns -3.0 for constant data (matching pandas)
  • Fixed EWM mean() formula - Corrected weight decay calculation to match pandas exactly
  • Fixed EWM std() and var() - Corrected bias correction formula and first value handling (returns NaN for first observation)

All operations now pass strict pandas compatibility tests (rtol=1e-10) for edge cases including:

  • All-NaN columns
  • Zero variance (constant data)
  • Near-zero variance (numerical precision edge cases)
  • Division by zero in pct_change

v0.2.1 (2026-01-20)

Critical Bug Fix:

  • Fixed pct_change() NaN handling to match pandas default behavior
    • Previous versions treated fill_method=None as default, causing 5x more NaN values
    • Now correctly defaults to fill_method='pad' (forward fill before computing), matching pandas
    • This fix resolves "Weights are all zero" errors in downstream applications using unlockedpd

API:

  • pct_change(fill_method='pad') - Default, matches pandas behavior (forward fills NaN before computing)
  • pct_change(fill_method=None) - No fill, fastest option (4.8x vs pandas), use when data has no NaN

v0.2.0 (2026-01-20)

  • Major performance improvements across all operations
  • Added EWM, expanding, cumulative, and pairwise operations
  • Improved parallel dispatch and memory layout optimization

v0.1.0 (2026-01-19)

  • Initial release with rolling, rank, and transform operations

License

MIT License - see LICENSE for details.

Acknowledgments

Built with:

  • Numba - JIT compilation for Python
  • pandas - Data analysis library
  • NumPy - Numerical computing

How This Project Was Built

This entire project was built using oh-my-claude-sisyphus, an advanced Claude Code harness that enables autonomous, iterative development with specialized AI agents. The codebase, benchmarks, documentation, and optimizations were all generated through the sisyphus workflow orchestration system.

Key oh-my-claude-sisyphus features used:

  • Ralph-Plan: Iterative planning with Prometheus (planner), Oracle (advisor), and Momus (reviewer) agents
  • Ultrawork Mode: Parallel agent execution for maximum throughput
  • Sisyphus-Junior: Focused task execution for implementation work

unlockedpd - Because your pandas code deserves to be fast.

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