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Vampire Image Analysis Package

Project description

VAMPIRE (Visually Aided Morpho-Phenotyping Image Recognition)

A robust method to quantify cell morphological heterogeneity

  1. System requirements
    OS : Windows 10 (64 bit) Version 1909
    Software is not compatible with older versions of Windows nor Mac.
    Non-standard hardware is not required.

  2. Installation Guide
    No installation required. Open the executable file to launch the graphic user interface (GUI) of the software
    It takes 20 seconds or less to initialize and launch the GUI.

  3. Demo Instructions to run on data can be found in the Procedure section of the manuscript.
    Expected output of the procedure is provided in the Figure 5 of the manuscript and also in the supplementary files.
    Expected run time for demo :
    Step 1-2, Segment cells or nuclei, 5~10 mins
    Step 3, Create a list of images to build the shape-analysis model, 1-3 mins
    Steps 4-9, Build shape-analysis model in VAMPIRE, 1-5 mins
    Steps 10-12, Application of the model to analyze shapes across conditions, 1-5 mins
    Total, steps 1-12, complete VAMPIRE analysis, 8-23 mins

  4. Instructions for use Instructions to run on data can be found in the Procedure section of the manuscript.
    By following the Procedure section, the users can reproduce the expected output data provided in the supplementary files.

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Files for vampireanalysis, version 3.4.4
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