varvis-connector 0.2.0

A Python package and CLI tool for interacting with the Varvis® API.

Varvis API Python package

Authors: Markus Konrad [e-mail], Bernt Popp [e-mail]

Summary

The varvis-connector package provides a Python interface for the Varvis API. It includes both a command-line interface (CLI) and a Python package with a client implementation. The package handles authentication, session management, and provides methods to retrieve various types of genomic data including SNV annotations, CNV target results, and CNV segments. It supports environment-based configuration and includes comprehensive error handling.

License

This project is licensed under the GNU General Public License v3.0 (GPLv3). See the LICENSE file for details.

Documentation

The full documentation for this project is available at laborberlin.github.io/varvis-connector/

It covers:

• Requirements and installation
• Configuration and environment variables
• Usage guide for the CLI and the Python package
• Python package API documentation
• Development guide
• Changelog