vascular-encoding-framework 0.0.1

Python package with the Vascular Encoding Framework implementation

Vascular Encoding Framework

This project contains the python implementation of the Vascular Encoding Framework to analyze and compare vascular structures. It can be installed as a python library. Additionally a CLI external module is also available under the name of vef_scripts.

Getting Started

1. First clone the repo locally:

   • With https:

     git clone https://github.com/PauR0/vascular_encoding_framework.git
     

   • With ssh:

     git clone [e-mail]:PauR0/vascular_encoding_framework.git
     

2. Install it with pip.

   :warning: We highly recommend to install the package inside a virtual environment and not at the user-level python interpreter.

   cd vascular_encoding_framework
   

   and then,

   pip install .
   

3. To check if the installation succeeded it may be worth trying to run a tutorial.

Citing the project.

Right now, the two main ways to cite this project are citing the repo:

The preferred one, is citing the paper where the Vessel Coordinate System was introduced:

@article{romero2025,
  author   = {Pau Romero and Abel Pedrós and Rafael Sebastian and Miguel Lozano and Ignacio García-Fernández},
  journal  = {Applied Mathematics and Computation},
  title    = {A robust shape model for blood vessels analysis},
  year     = {2025},
  issn     = {0096-3003},
  pages    = {129078},
  volume   = {487},
  doi      = {https://doi.org/10.1016/j.amc.2024.129078},
  url      = {https://www.sciencedirect.com/science/article/pii/S0096300324005393},
}

Although, there also exists the possibility of citing the repo as is:

@software{VEF,
  author = {Romero, Pau},
  title = {Vascular Encoding Framework},
  url = {https://github.com/PauR0/vascular_encoding_framework},
  year = {2024}
}