vault-for-llm 0.6.99

Local-first Markdown + SQLite memory for LLM agents, with keyword search, optional embeddings, MCP, and bounded citation tools.

Vault-for-LLM

Local-first project memory for AI agents.

Vault-for-LLM turns project notes, decisions, bugs, SOPs, Obsidian notes, and agent-written memory candidates into a portable SQLite vault that agents can search, read in bounded ranges, cite, test, back up, and sync when needed.

It is not trying to replace your model, your wiki, or hosted memory systems. It sits between them: a small governed memory layer that helps agents reuse project knowledge without losing source, scope, or reviewability.

The default path is agent-driven: ask your coding agent to install Vault, choose where the database should live, and run a small search/read/propose smoke test. Manual commands are still here, but they are no longer the main story.

Why It Exists

Most agent failures are practical, not mysterious:

• a new session forgets why a decision was made
• an agent reads the wrong outdated note
• useful fixes stay buried in chat history
• private observations get mixed with shared project knowledge
• a team cannot tell whether retrieval is actually working

Vault-for-LLM is built for that practical gap. It gives agents a place to ask:

What has this project already learned, where did it come from, and am I allowed to use it?

What You Get

• Local-first memory - Markdown and SQLite by default. No cloud service is required for core use.
• Agent-friendly retrieval - CLI and MCP tools for search, bounded reads, candidate memory, Document Map inspection, and optional remote reads.
• Candidate-first writes - agents can propose memory before it becomes active knowledge.
• Governance metadata - scope, sensitivity, owner agent, allowed agents, memory type, and expiry travel with each memory.
• Obsidian bridge - import existing Obsidian notes into Vault, or export compiled Vault knowledge back into Obsidian-readable Markdown.
• Optional remote sharing - Supabase sync and read-only RPC templates let agents on different machines share reviewed memory.
• Report-first automation - generated cron, LaunchAgent, and n8n templates can run memory maintenance without silently deleting or promoting memory.
• Measurable recall - Search QA and onboarding benchmarks measure whether agents can find the right source, not just sound confident.

When To Use It

Use Vault-for-LLM when:

• you work with Claude Code, Codex, Hermes Agent, OpenClaw, OpenCode, n8n, or another agent that needs project context across sessions
• you want a shared project memory without giving every agent raw private notes
• you already have Markdown or Obsidian notes and want agents to search them with citations
• you need local-first storage but optional Supabase sharing for other hosts
• you care about retrieval quality enough to test it

Do not start here if you only need a hosted vector database, a personal notes app, or an automatic conversation memory product.

Install

Agent-Driven Install

For most users, the right path is to ask an agent to install it:

Install Vault-for-LLM for this project. Use vault-for-llm[mcp]==0.6.99.
Ask whether the vault should be shared, private, domain-specific, or temporary.
Ask for a stable project directory and generate a stable venv script for
long-lived agent jobs. Ask separately about MCP, semantic search, Supabase,
Obsidian import, Headroom compression, and memory-agent guidance. Install only
the optional dependencies I approve. Finish with a search/read/propose smoke test.

The agent should use the guided installer:

python3 -m venv .venv
source .venv/bin/activate
pip install "vault-for-llm[mcp]==0.6.99"

vault setup-agent

setup-agent registers the Agent in the local registry at ~/.vault-for-llm/agent-registry.json and writes an agent-install/ pack with:

• MCP startup instructions
• update-status and rollout doctor templates
• Codex, Claude Code, OpenClaw, and Hermes Agent startup templates
• a runtime update playbook for multi-runtime machines
• a hybrid shared/private vault layout manifest

Each runtime can read its own focused startup view:

vault update-status --read-status --agent codex

If you want Vault to safely paste one generated runtime template into a target file, preview first and then apply:

vault agent install-runtime-template --runtime codex --target ./AGENTS.md
vault agent install-runtime-template --runtime codex --target ./AGENTS.md --apply

The apply command is dry-run by default and creates a backup before changing an existing file. Full install details live in docs/agent_install.md.

For non-interactive agent installs:

vault setup-agent \
  --non-interactive \
  --agent codex \
  --scope shared \
  --agent-project-dir ~/Vaults/my-project \
  --memory-layout hybrid \
  --features core,mcp,supabase,headroom \
  --write-stable-venv-script \
  --supabase-setup simple \
  --remote-reader shell \
  --automation-schedule cron \
  --automation-write-workspace \
  --automation-include-transcripts \
  --automation-auto-promote-low-risk \
  --json

This can generate agent-install/setup-stable-venv.sh, so scheduled jobs and MCP commands do not depend on a disposable /tmp virtualenv.

Manual Quickstart

pip install "vault-for-llm[mcp]==0.6.99"

vault init ~/Vaults/demo
vault add "First lesson" \
  --content "The bug was caused by a missing cache key. The fix was adding provider metadata." \
  --project-dir ~/Vaults/demo
vault compile --project-dir ~/Vaults/demo --no-embed
vault search "cache key" --project-dir ~/Vaults/demo

Daily Agent Flow

The intended loop is simple:

1. Search first - find likely source notes.
2. Read bounded ranges - avoid dumping whole documents into context.
3. Answer with sources - keep citations tied to original Vault content.
4. Propose memory - let agents suggest new lessons as candidates.
5. Review before promotion - keep active memory clean and auditable.

Agents can also turn a completed session transcript into reviewable candidates:

vault capture discover --project-dir ~/Vaults/my-project --pretty
vault capture session codex-session.jsonl --project-dir ~/Vaults/my-project --pretty
vault capture session codex-session.jsonl --project-dir ~/Vaults/my-project --write-candidates

Discovery lists likely transcript files without reading their contents. Session capture previews by default. --write-candidates writes candidate memories only; it does not promote active knowledge.

For MCP-capable runtimes:

vault-mcp --project-dir ~/Vaults/my-project --tool-profile core

Recommended core tools:

• vault_search
• vault_read_range
• vault_memory_propose
• vault_stats
• vault_update_status
• vault_automation_handoff

Reviewer or maintenance agents can use vault_capture_discover and vault_capture_session from the MCP review profile to run the same session-capture flow. Capture previews by default; write_candidates=true is required before anything enters the candidate queue.

MCP guides:

• Practical tool reference: docs/mcp_tool_reference.md
• Workflow and token-budget guidance: docs/mcp_memory_workflow.md

Memory Model

Vault uses depth layers for how memory is used:

Layer	Purpose
L0	identity and project framing
L1	stable facts, rules, and preferences
L2	active context, summaries, current work
L3	detailed knowledge, SOPs, bugs, decisions, source notes

Access is not controlled by layer alone. Use governance metadata for policy:

• scope: private, project, shared, public
• sensitivity: low, medium, high, restricted
• owner_agent
• allowed_agents
• memory_type
• expires_at

Searches record lightweight usage counters (access_count, citation_count, last_accessed_at). The default lightweight reranker uses these signals as a small, saturated boost, so frequently useful memories can rise slightly without overriding source relevance, trust, freshness, or access policy. vault automation brief also turns usage into an explainable importance_score with visible components for access, citation, recency, trust, freshness, TTL pressure, and protection hints. The score is for ranking and review guidance only; it never bypasses governance or promotes memory by itself.

Short-lived memories with expires_at can be moved to status: archived instead of deleted:

vault usage stats
vault usage archive-expired --apply
vault usage cold-store-expired --apply

archive-expired is for expired memories with no protected usage signal. cold-store-expired is for expired memories that are still retrieved or cited: it writes a compact summary, moves the row out of normal recall with status: archived, keeps the original content for audit/restore, and skips private, high/restricted, and L0/L1 memory. Policy automation can run the same cold-store path during vault automation run or vault automation cycle when cold_store_used_expired and --apply are enabled. Cold-store previews and automation ledgers use the same importance_score to sort expired-but-used memories, so review starts with the memories most likely to deserve refresh, summary, or protected cold storage. vault automation inbox and vault automation brief turn those report-level signals into a compact review digest, so the human review surface stays short: review protected TTL decisions, expired-but-used memory, cold-store summaries, and promotion previews before opening raw candidate content. When vault automation eval --write-learning-policy has enough reviewed feedback, inbox/brief also use that bounded learning policy to sort review items. The multiplier is visible and capped; it is not an authorization policy.

Design notes: docs/memory_governance.md.

Policy-based automation lets agents handle routine maintenance while humans keep ownership of the rules:

vault automation plan --write-policy
vault automation run
vault automation run --apply
vault automation cycle --apply
vault automation cycle --apply --include-transcripts --capture-transcripts --write-workspace
vault automation inbox --limit 5
vault automation inbox --include-transcripts --write-handoff

vault capture discover and vault capture session are the ingestion side of that loop. Discovery finds likely transcript files without reading their contents. Capture scans the chosen transcript for reusable decisions, pitfalls, workflows, and source-of-truth signals, then routes them through the normal candidate gates. Automation and Dream can later rank and clean those candidates, but promotion remains explicit. MCP review agents can call vault_capture_discover and vault_capture_session for the same preview-first flow without adding those heavier tools to the everyday core profile. vault automation inbox --include-transcripts can include the same metadata-only discovery hints in reports/automation/inbox-latest.json, so the next scheduled agent can see uncaptured transcript exports without reading their contents first. When you explicitly add --capture-transcripts --apply, the cycle can turn those discovered transcript files into gated review candidates. It still does not promote active memory, and the generated handoffs omit raw transcript and candidate content.

Balanced automation can pre-fill the memory candidate queue with Dream and Forgetting suggestions when --apply is used, but it still does not promote candidates by default or hard-delete memory. Use conservative mode when scheduled jobs should only write reports.

If you want the first real closed loop from candidate to formal memory, enable it deliberately during agent install:

vault setup-agent \
  --automation-schedule cron \
  --automation-apply \
  --automation-auto-promote-low-risk

That installer option writes automation_policy.yaml for you. The policy is equivalent to:

auto_promote_low_risk_candidates: true
auto_promote_allowed_sources: [session_capture]
auto_promote_allowed_memory_types: [session_lesson]
auto_promote_allowed_sensitivities: [low]
auto_promote_min_trust: 0.65
auto_promote_max_per_run: 3
auto_promote_requires_source_ref: true

With that policy, vault automation cycle --apply can promote only low-risk session lessons that pass privacy, duplicate, metadata, and quality gates and include a source reference. Without --apply, Vault only previews what would be promoted. Private, high-sensitivity, duplicate, weak, or sourceless candidates stay in the review queue.

vault automation eval reads promoted/rejected/blocked candidate outcomes and shows which suggestion sources are earning trust over time. The signal guides future curation priority; it does not override review, privacy, or access policy.

Rejected and blocked candidates can be recorded directly:

vault candidate-review mem_123 --outcome rejected --reason "Too vague to keep."

This is useful for agents because "do not keep this" becomes structured feedback instead of disappearing into chat history.

For scheduled agents, vault automation eval --write-learning-policy also writes reports/automation/learning_policy.json. That file contains bounded priority hints, such as preferring a suggestion source that is often promoted or downgrading one that is often rejected. The bounds are deliberately small and never authorize auto-promotion, deletion, or privacy bypass.

Dream and scheduled automation can read that policy on the next run. They use it to annotate and sort candidate suggestions, so reviewers see better-ranked cleanup work first while the formal promote/reject decision remains explicit. When Dream finds duplicate groups, it can also write a consolidation_suggestion candidate that asks for a reviewed merge/archive decision without changing active knowledge by itself. vault automation cycle runs that feedback-to-curation loop in one command: evaluate reviewed outcomes, write the bounded learning policy, then run safe automation so Dream can consume the latest hints. Add --write-workspace to write reports/automation/cycle-latest.json, a compact next-agent workbench with candidate review, optional transcript paths, and the latest curation-policy summary. It also writes reports/automation/cycle-latest.md, a readable handoff with the same safe summary, priority brief, suggested next tasks, an agent start prompt, and no raw candidate or transcript content. The next agent can read the latest compact handoff with:

vault automation handoff

MCP-capable agents can read the same compact handoff with vault_automation_handoff in the core profile.

vault automation inbox is the short review surface for that loop. It does not mutate memory. It ranks privacy-blocked, sensitive, duplicate, weak-quality, and automation-generated candidates, hides raw content by default, and shows only the smallest useful queue for a human or trusted agent to review. Scheduled automation templates write the same view to reports/automation/inbox-latest.json after each successful run. vault automation activity is the shortest audit surface for the same loop: it shows recent auto-promote previews, promotions, and skipped reasons without raw candidate content. MCP-capable agents can call vault_automation_activity from the core profile.

vault automation brief is the shortest daily intelligence view. It combines learning hints from promote/reject feedback, explainable memory importance, forgetting pressure, shared agent health, and the 5% human-review queue. Use it before opening full reports:

vault automation brief --pretty

MCP-capable agents can call vault_automation_brief from the core profile.

Agent installers can generate cron, LaunchAgent, or n8n templates with vault setup-agent --automation-schedule cron|launchagent|n8n|all. Scheduled templates default to vault automation cycle, so long-running agents can learn from reviewed outcomes before the next maintenance pass. The schedule is still report-first unless the user explicitly opts into --automation-apply; pass --automation-command run for a simpler maintenance-only schedule. Add --automation-write-workspace when generated schedules should write reports/automation/cycle-latest.json and reports/automation/cycle-latest.md after the cycle, so the next agent starts from the daily memory workbench instead of full reports. Generated schedule README files include vault automation handoff --project-dir ... as the read-only startup command for the next agent. Add --automation-include-transcripts only when the scheduled handoff should also list uncaptured transcript exports. That list is metadata-only and keeps transcript contents out of the generated handoff. Add --automation-auto-promote-low-risk only when the user wants setup-agent to write the low-risk auto-promote policy. Pair it with --automation-apply when the scheduled cycle should actually promote eligible candidates; without --apply, scheduled jobs preview only.

Automation details: docs/automation.md.

Memory Maintenance Agents

Vault can generate guidance for Profile, Dream, and Forgetting agents. These agents are conservative by default: Dream runs produce reports first, cleanup checks look for stale entries, duplicates, and weak metadata, and apply_safe paths should create backups so rollback remains possible. Promotion, deletion, archive, or expiry actions should stay candidate-only until a user-approved policy allows stronger automation.

Setup guide: docs/agent_install.md. Governance details: docs/memory_governance.md.

Integrations

System	Path
Claude Code / Codex / OpenCode	CLI or local stdio MCP
Hermes Agent / OpenClaw	CLI, MCP, generated agent install files
n8n	generated Supabase sync and remote-reader workflow templates
Coze or hosted agents	Supabase read-only RPC and OpenAPI template
Obsidian	import existing notes, export compiled Vault knowledge
Headroom	optional compression after Vault has narrowed context

Start here: docs/agent_integrations.md.

Optional Supabase Sharing

SQLite remains the source of truth. Supabase is optional.

Use it when agents on different machines or hosted platforms need to read a shared, filtered copy of reviewed project memory. Remote readers should pass the search result id directly into map/read; it may be an integer or a Supabase UUID.

pip install "vault-for-llm[supabase]==0.6.99"
python -m scripts.sync_to_supabase --db ~/Vaults/my-project/vault.db --document-map --health

Setup guide: docs/supabase_setup.md. Read policy template: docs/supabase_read_policy.sql.

Obsidian

Import an existing Obsidian vault:

vault import obsidian --vault ~/Documents/ObsidianVault --project-dir ~/Vaults/my-project --dry-run
vault import obsidian --vault ~/Documents/ObsidianVault --project-dir ~/Vaults/my-project --compile

Export compiled Vault knowledge back into Obsidian-readable notes:

vault export obsidian --project-dir ~/Vaults/my-project --vault ~/Documents/ObsidianVault

The importer skips .obsidian, .trash, .git, and generated Vault export folders by default.

Retrieval Quality

Vault includes lightweight QA tools so retrieval can be tested instead of trusted by intuition alone.

vault search-qa run \
  --qa-file benchmarks/search_qa/basic.en.json \
  --mode keyword \
  --output /tmp/vault-searchqa.json

Current evidence is intentionally described as retrieval evidence, not final answer quality:

• project onboarding benchmark: Vault found source-backed project memory across 28/28 tasks in local proof runs
• LoCoMo retrieval probes: hierarchical session + local evidence-window retrieval reached high evidence recall in official-scored categories
• official answerer/judge scores are separate and require model-provider runs

More detail: docs/agent_onboarding_benchmark.md and docs/search_qa_benchmarking.md.

Maturity

Area	Status
local SQLite, Markdown compile, keyword search	stable
CLI setup, candidate memory, bounded reads	usable
MCP tools	usable, profile selection recommended
Obsidian import/export	usable
Supabase sync and remote read templates	advanced optional
policy-based memory automation	usable-alpha
semantic search, API/local embedding providers, rerank, benchmark adapters	evolving
Profile / Dream / Forgetting agents	guidance-first, not autonomous deletion

Vault-for-LLM is still pre-1.0. The core local path is intentionally conservative; advanced integrations are powerful, but should be enabled deliberately.

Documentation Map

• Agent install runbook: docs/agent_install.md
• CLI reference: docs/cli_reference.md
• Agent integrations: docs/agent_integrations.md
• Memory automation: docs/automation.md
• Memory governance: docs/memory_governance.md
• Supabase setup: docs/supabase_setup.md
• MCP tool reference: docs/mcp_tool_reference.md
• MCP workflow: docs/mcp_memory_workflow.md
• PageIndex / Headroom comparison: docs/comparisons/pageindex_headroom.md
• Vision notes: docs/vision.md

Development

git clone https://github.com/zycaskevin/Vault-for-LLM.git
cd Vault-for-LLM
python3 -m venv .venv
source .venv/bin/activate
pip install -e ".[dev,mcp]"
pytest -q

License

Apache-2.0. See LICENSE.