VBZ-H5Py-Plugin

This module provides a plugin to H5Py for the VBZ (de)compression library.

VBZ Compression

VBZ compression is a compression algorithm developed by Oxford Nanopore to reduce file size and improve read/write performance when handling raw data in POD5/Fast5 files. Previously, the default compression was GZIP and comparing to GZIP we see a compression improvement of >30% and a CPU performance improvement of >10X for compression and >5X for decompression. Further details of the implementation and benchmarks can be found here: Nanoporetech/vbz_compression

Usage

Simply import the module to register the vbz plugin with h5py.

import vbz_h5py_plugin

Download files

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Source Distribution

vbz_h5py_plugin-1.0.1.tar.gz (1.4 MB view details)

Uploaded Nov 10, 2022 Source

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vbz_h5py_plugin-1.0.1-py3-none-any.whl (1.4 MB view details)

Uploaded Nov 10, 2022 Python 3

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Details for the file vbz_h5py_plugin-1.0.1.tar.gz.

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Download URL: vbz_h5py_plugin-1.0.1.tar.gz
Upload date: Nov 10, 2022
Size: 1.4 MB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: twine/4.0.1 CPython/3.7.15

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File details

Details for the file vbz_h5py_plugin-1.0.1-py3-none-any.whl.

File metadata

Download URL: vbz_h5py_plugin-1.0.1-py3-none-any.whl
Upload date: Nov 10, 2022
Size: 1.4 MB
Tags: Python 3
Uploaded using Trusted Publishing? No
Uploaded via: twine/4.0.1 CPython/3.7.15

File hashes

Hashes for vbz_h5py_plugin-1.0.1-py3-none-any.whl
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