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vcf_subset

Efficient VCF subsetting by genome position. Written in Rust, but provided as a python module to save ~3 minutes per TB GVCF

Install

pip install vcf_subset

Local (dev) install

# Optional virtual environment
python -m virtualenv env
source env/bin/activate

# Install
pip install .

Release files for vcf-subset 2.0.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for vcf-subset 2.0.0
File Size Uploaded
vcf_subset-2.0.0.tar.gz 5.5 kB Details

Built distributions (wheels)

Table of built distributions (wheels) for vcf-subset 2.0.0
File
vcf_subset-2.0.0-pp310-pypy310_pp73-musllinux_1_2_x86_64.whl PyPy 3.10 PyPy 3.10 7.3 Linux musl 1.2+ x86-64 Details
vcf_subset-2.0.0-pp310-pypy310_pp73-musllinux_1_2_i686.whl PyPy 3.10 PyPy 3.10 7.3 Linux musl 1.2+ x86-32 Details
vcf_subset-2.0.0-pp310-pypy310_pp73-musllinux_1_2_armv7l.whl PyPy 3.10 PyPy 3.10 7.3 Linux musl 1.2+ ARMv7l Details
vcf_subset-2.0.0-pp310-pypy310_pp73-musllinux_1_2_aarch64.whl PyPy 3.10 PyPy 3.10 7.3 Linux musl 1.2+ ARM64 Details
vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ x86-64 Details
vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ IBM System/390x Details
vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ PowerPC 64-le Details
vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ ARMv7l Details
vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ ARM64 Details
vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_5_i686.manylinux1_i686.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.5+ x86-32 Details
vcf_subset-2.0.0-pp39-pypy39_pp73-musllinux_1_2_x86_64.whl PyPy 3.9 PyPy 3.9 7.3 Linux musl 1.2+ x86-64 Details
vcf_subset-2.0.0-pp39-pypy39_pp73-musllinux_1_2_i686.whl PyPy 3.9 PyPy 3.9 7.3 Linux musl 1.2+ x86-32 Details
vcf_subset-2.0.0-pp39-pypy39_pp73-musllinux_1_2_armv7l.whl PyPy 3.9 PyPy 3.9 7.3 Linux musl 1.2+ ARMv7l Details
vcf_subset-2.0.0-pp39-pypy39_pp73-musllinux_1_2_aarch64.whl PyPy 3.9 PyPy 3.9 7.3 Linux musl 1.2+ ARM64 Details
vcf_subset-2.0.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ x86-64 Details
vcf_subset-2.0.0-pp39-pypy39_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ IBM System/390x Details
vcf_subset-2.0.0-pp39-pypy39_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ PowerPC 64-le Details
vcf_subset-2.0.0-pp39-pypy39_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ ARMv7l Details
vcf_subset-2.0.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ ARM64 Details
vcf_subset-2.0.0-pp39-pypy39_pp73-manylinux_2_5_i686.manylinux1_i686.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.5+ x86-32 Details
vcf_subset-2.0.0-pp38-pypy38_pp73-musllinux_1_2_x86_64.whl PyPy 3.8 PyPy 3.8 7.3 Linux musl 1.2+ x86-64 Details
vcf_subset-2.0.0-pp38-pypy38_pp73-musllinux_1_2_i686.whl PyPy 3.8 PyPy 3.8 7.3 Linux musl 1.2+ x86-32 Details
vcf_subset-2.0.0-pp38-pypy38_pp73-musllinux_1_2_armv7l.whl PyPy 3.8 PyPy 3.8 7.3 Linux musl 1.2+ ARMv7l Details
vcf_subset-2.0.0-pp38-pypy38_pp73-musllinux_1_2_aarch64.whl PyPy 3.8 PyPy 3.8 7.3 Linux musl 1.2+ ARM64 Details
vcf_subset-2.0.0-pp38-pypy38_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ IBM System/390x Details
vcf_subset-2.0.0-pp38-pypy38_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ PowerPC 64-le Details
vcf_subset-2.0.0-pp38-pypy38_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ ARMv7l Details
vcf_subset-2.0.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ ARM64 Details
vcf_subset-2.0.0-cp312-none-win_amd64.whl CPython 3.12 none Windows x86-64 Details
vcf_subset-2.0.0-cp312-none-win32.whl CPython 3.12 none Windows x86-32 Details
vcf_subset-2.0.0-cp312-cp312-musllinux_1_2_x86_64.whl CPython 3.12 CPython 3.12 Linux musl 1.2+ x86-64 Details
vcf_subset-2.0.0-cp312-cp312-musllinux_1_2_i686.whl CPython 3.12 CPython 3.12 Linux musl 1.2+ x86-32 Details
vcf_subset-2.0.0-cp312-cp312-musllinux_1_2_armv7l.whl CPython 3.12 CPython 3.12 Linux musl 1.2+ ARMv7l Details
vcf_subset-2.0.0-cp312-cp312-musllinux_1_2_aarch64.whl CPython 3.12 CPython 3.12 Linux musl 1.2+ ARM64 Details
vcf_subset-2.0.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ x86-64 Details
vcf_subset-2.0.0-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ IBM System/390x Details
vcf_subset-2.0.0-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ PowerPC 64-le Details
vcf_subset-2.0.0-cp312-cp312-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ ARMv7l Details
vcf_subset-2.0.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ ARM64 Details
vcf_subset-2.0.0-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.whl CPython 3.12 CPython 3.12 Linux glibc 2.5+ x86-32 Details
vcf_subset-2.0.0-cp312-cp312-macosx_11_0_arm64.whl CPython 3.12 CPython 3.12 macOS 11.0+ ARM64 Details
vcf_subset-2.0.0-cp312-cp312-macosx_10_12_x86_64.whl CPython 3.12 CPython 3.12 macOS 10.12+ x86-64 Details
vcf_subset-2.0.0-cp311-none-win_amd64.whl CPython 3.11 none Windows x86-64 Details
vcf_subset-2.0.0-cp311-none-win32.whl CPython 3.11 none Windows x86-32 Details
vcf_subset-2.0.0-cp311-cp311-musllinux_1_2_x86_64.whl CPython 3.11 CPython 3.11 Linux musl 1.2+ x86-64 Details
vcf_subset-2.0.0-cp311-cp311-musllinux_1_2_i686.whl CPython 3.11 CPython 3.11 Linux musl 1.2+ x86-32 Details
vcf_subset-2.0.0-cp311-cp311-musllinux_1_2_armv7l.whl CPython 3.11 CPython 3.11 Linux musl 1.2+ ARMv7l Details
vcf_subset-2.0.0-cp311-cp311-musllinux_1_2_aarch64.whl CPython 3.11 CPython 3.11 Linux musl 1.2+ ARM64 Details
vcf_subset-2.0.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ x86-64 Details
vcf_subset-2.0.0-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ IBM System/390x Details
vcf_subset-2.0.0-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ PowerPC 64-le Details
vcf_subset-2.0.0-cp311-cp311-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ ARMv7l Details
vcf_subset-2.0.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ ARM64 Details
vcf_subset-2.0.0-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.whl CPython 3.11 CPython 3.11 Linux glibc 2.5+ x86-32 Details
vcf_subset-2.0.0-cp311-cp311-macosx_11_0_arm64.whl CPython 3.11 CPython 3.11 macOS 11.0+ ARM64 Details
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vcf_subset-2.0.0-cp310-none-win_amd64.whl CPython 3.10 none Windows x86-64 Details
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vcf_subset-2.0.0-cp310-cp310-musllinux_1_2_x86_64.whl CPython 3.10 CPython 3.10 Linux musl 1.2+ x86-64 Details
vcf_subset-2.0.0-cp310-cp310-musllinux_1_2_i686.whl CPython 3.10 CPython 3.10 Linux musl 1.2+ x86-32 Details
vcf_subset-2.0.0-cp310-cp310-musllinux_1_2_armv7l.whl CPython 3.10 CPython 3.10 Linux musl 1.2+ ARMv7l Details
vcf_subset-2.0.0-cp310-cp310-musllinux_1_2_aarch64.whl CPython 3.10 CPython 3.10 Linux musl 1.2+ ARM64 Details
vcf_subset-2.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ x86-64 Details
vcf_subset-2.0.0-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ IBM System/390x Details
vcf_subset-2.0.0-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ PowerPC 64-le Details
vcf_subset-2.0.0-cp310-cp310-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ ARMv7l Details
vcf_subset-2.0.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ ARM64 Details
vcf_subset-2.0.0-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.whl CPython 3.10 CPython 3.10 Linux glibc 2.5+ x86-32 Details
vcf_subset-2.0.0-cp310-cp310-macosx_11_0_arm64.whl CPython 3.10 CPython 3.10 macOS 11.0+ ARM64 Details
vcf_subset-2.0.0-cp39-none-win_amd64.whl CPython 3.9 none Windows x86-64 Details
vcf_subset-2.0.0-cp39-none-win32.whl CPython 3.9 none Windows x86-32 Details
vcf_subset-2.0.0-cp39-cp39-musllinux_1_2_x86_64.whl CPython 3.9 CPython 3.9 Linux musl 1.2+ x86-64 Details
vcf_subset-2.0.0-cp39-cp39-musllinux_1_2_i686.whl CPython 3.9 CPython 3.9 Linux musl 1.2+ x86-32 Details
vcf_subset-2.0.0-cp39-cp39-musllinux_1_2_armv7l.whl CPython 3.9 CPython 3.9 Linux musl 1.2+ ARMv7l Details
vcf_subset-2.0.0-cp39-cp39-musllinux_1_2_aarch64.whl CPython 3.9 CPython 3.9 Linux musl 1.2+ ARM64 Details
vcf_subset-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ x86-64 Details
vcf_subset-2.0.0-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ IBM System/390x Details
vcf_subset-2.0.0-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ PowerPC 64-le Details
vcf_subset-2.0.0-cp39-cp39-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ ARMv7l Details
vcf_subset-2.0.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ ARM64 Details
vcf_subset-2.0.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl CPython 3.9 CPython 3.9 Linux glibc 2.5+ x86-32 Details
vcf_subset-2.0.0-cp39-cp39-macosx_11_0_arm64.whl CPython 3.9 CPython 3.9 macOS 11.0+ ARM64 Details
vcf_subset-2.0.0-cp38-none-win_amd64.whl CPython 3.8 none Windows x86-64 Details
vcf_subset-2.0.0-cp38-none-win32.whl CPython 3.8 none Windows x86-32 Details
vcf_subset-2.0.0-cp38-cp38-musllinux_1_2_x86_64.whl CPython 3.8 CPython 3.8 Linux musl 1.2+ x86-64 Details
vcf_subset-2.0.0-cp38-cp38-musllinux_1_2_i686.whl CPython 3.8 CPython 3.8 Linux musl 1.2+ x86-32 Details
vcf_subset-2.0.0-cp38-cp38-musllinux_1_2_armv7l.whl CPython 3.8 CPython 3.8 Linux musl 1.2+ ARMv7l Details
vcf_subset-2.0.0-cp38-cp38-musllinux_1_2_aarch64.whl CPython 3.8 CPython 3.8 Linux musl 1.2+ ARM64 Details
vcf_subset-2.0.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ x86-64 Details
vcf_subset-2.0.0-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ IBM System/390x Details
vcf_subset-2.0.0-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ PowerPC 64-le Details
vcf_subset-2.0.0-cp38-cp38-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ ARMv7l Details
vcf_subset-2.0.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ ARM64 Details
vcf_subset-2.0.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl CPython 3.8 CPython 3.8 Linux glibc 2.5+ x86-32 Details

Total release size: 27.1 MB

Release files / vcf_subset-2.0.0.tar.gz

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Release files / vcf_subset-2.0.0-pp310-pypy310_pp73-musllinux_1_2_x86_64.whl

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Release files / vcf_subset-2.0.0-pp310-pypy310_pp73-musllinux_1_2_aarch64.whl

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Release files / vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

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Release files / vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl

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Release files / vcf_subset-2.0.0-pp310-pypy310_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl

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Size 263.2 kB
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Release files / vcf_subset-2.0.0-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-musllinux_1_2_x86_64.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-musllinux_1_2_i686.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-musllinux_1_2_aarch64.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-macosx_11_0_arm64.whl

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Release files / vcf_subset-2.0.0-cp311-cp311-macosx_10_12_x86_64.whl

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Release files / vcf_subset-2.0.0-cp310-none-win_amd64.whl

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Release files / vcf_subset-2.0.0-cp310-cp310-musllinux_1_2_x86_64.whl

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Release files / vcf_subset-2.0.0-cp310-cp310-musllinux_1_2_i686.whl

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Release files / vcf_subset-2.0.0-cp310-cp310-musllinux_1_2_armv7l.whl

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Release files / vcf_subset-2.0.0-cp310-cp310-musllinux_1_2_aarch64.whl

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Release files / vcf_subset-2.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

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Release files / vcf_subset-2.0.0-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl

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Release files / vcf_subset-2.0.0-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.whl

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Release files / vcf_subset-2.0.0-cp310-cp310-macosx_11_0_arm64.whl

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Release files / vcf_subset-2.0.0-cp39-none-win_amd64.whl

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Release files / vcf_subset-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

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Release files / vcf_subset-2.0.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl

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Release files / vcf_subset-2.0.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl

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Release files / vcf_subset-2.0.0-cp38-cp38-musllinux_1_2_x86_64.whl

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Release files / vcf_subset-2.0.0-cp38-cp38-musllinux_1_2_i686.whl

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Release files / vcf_subset-2.0.0-cp38-cp38-musllinux_1_2_armv7l.whl

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Release files / vcf_subset-2.0.0-cp38-cp38-musllinux_1_2_aarch64.whl

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Release files / vcf_subset-2.0.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

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Release files / vcf_subset-2.0.0-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl

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Release files / vcf_subset-2.0.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl

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Release files / vcf_subset-2.0.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl

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