venn-abers 1.5.3

Venn-ABERS calibration package

Venn-ABERS calibration

This library contains the Python implementation of Venn-ABERS calibration for binary and multiclass classification problems.

Installation

pip install venn-abers

The method can be applied on top of an underlying scikit-learn algorithm.

Example Usage

from sklearn.datasets import make_classification
from sklearn.model_selection import train_test_split
from sklearn.naive_bayes import GaussianNB

from venn_abers import VennAbersCalibrator

X, y = make_classification(n_samples=1000, n_classes=3, n_informative=10)
X_train, X_test, y_train, y_test = train_test_split(X, y)

clf = GaussianNB()

# Define Venn-ABERS calibrator
va = VennAbersCalibrator(estimator=clf, inductive=True, cal_size=0.2, random_state=101)

# Fit on the training set
va.fit(X_train, y_train)

# Generate probabilities and class predictions on the test set
p_prime = va.predict_proba(X_test)
y_pred = va.predict(X_test)

Scikit-Learn Compatibility

The venn-abers library is fully compatible natively with the scikit-learn ecosystem! It seamlessly inherits from BaseEstimator allowing it to be dropped directly into workflows like Pipeline, GridSearchCV, and cross_val_score.

Furthermore, this compatibility is 100% backwards-compatible with all previous implementations of the library, so no existing code will break.

You can also pass **kwargs directly into the .fit() method to route parameters dynamically to the underlying estimator (e.g. passing eval_set to XGBoost):

from sklearn.pipeline import Pipeline
from sklearn.preprocessing import StandardScaler
from xgboost import XGBClassifier
from venn_abers import VennAbersCalibrator

# Passing kwargs through fit explicitly
va = VennAbersCalibrator(estimator=XGBClassifier(), inductive=True, cal_size=0.2)
va.fit(X_train, y_train, eval_set=[(X_val, y_val)], early_stopping_rounds=10)

# Scikit-learn Pipeline Integration
pipeline = Pipeline([
    ('scaler', StandardScaler()),
    ('va', VennAbersCalibrator(estimator=GaussianNB(), inductive=True, cal_size=0.2))
])
pipeline.fit(X_train, y_train)
p_prime_pipeline = pipeline.predict_proba(X_test)

Examples

Further examples can be found in the github repository https://github.com/ip200/venn-abers in the examples folder:

• simple_classification.ipynb for a simple example in the binary classification setting.
• multiclass_classification.ipynb for the multiclass setting.
• comparison_with_existing.ipynb for the comparison with a previous github implementation.
• ivar_example.ipynb for an example of Inductive Venn-ABERS for regression.
• scikit_learn_integration.ipynb for an example of the scikit-learn native integration.

Academic Usage

The venn-abers library has been used or referenced in several academic works related to probability calibration, uncertainty estimation, and conformal prediction.

Papers Referencing This Repository

• Kazantsev, D. (2025)
  Adaptive Set‑Mass Calibration with Conformal Prediction.
  arXiv:2505.15437

• Rabenseifner, M. (2025)
  Calibration Strategies for Robust Causal Estimation: Theoretical and Empirical Insights on Propensity Score Based Estimators.
  arXiv:2503.17290

• Löfström et al. (2024)
  Calibrated Explanations: With Uncertainty Information and Counterfactuals.
  Expert Systems with Applications.

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Research Using Venn‑Abers Calibration

These papers apply Venn‑Abers, IVAP, or CVAP calibration methods.

• Manokhin and Grønhaug (2025)
  Classifier Calibration at Scale: An Empirical Study of Model-Agnostic Post-Hoc Methods.

• Boger et al. (2025)
  Functional protein mining with conformal guarantees.

• van der Laan & Alaa (2025)
  Generalized Venn and Venn‑Abers Calibration with Applications in Conformal Prediction.

• Johansson, Löfström & Sönströd (2023)
  Well‑Calibrated Probabilistic Predictive Maintenance using Venn‑Abers.

• Pereira et al. (2020)
  Targeting the Uncertainty of Predictions at Patient Level.
  Journal of Biomedical Informatics.

For a more comprehensive list please see Google Scholar

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Related Libraries

• MAPIE – Model Agnostic Prediction Interval Estimator
  MAPIE includes calibration utilities referencing Venn‑Abers predictors.
  https://github.com/scikit-learn-contrib/MAPIE

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Foundational Research

• Vovk & Petej (2014) — Venn‑Abers Predictors.
• Vovk, Petej & Fedorova (2015) — Large‑scale probabilistic predictors with validity guarantees.
• Manokhin (2017) — Multi‑class probabilistic classification using inductive and cross Venn‑Abers predictors.

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Citation

If you use this library in academic work, please cite:

@software{petej_venn_abers,
  author = {Petej, Ivan},
  title = {venn-abers: Venn-Abers calibration for probabilistic classifiers},
  year = {2024},
  url = {https://github.com/ip200/venn-abers}
}

You may also cite the foundational paper:

@inproceedings{vovk2014venn,
  title={Venn-Abers predictors},
  author={Vovk, Vladimir and Petej, Ivan},
  booktitle={Proceedings of the Thirtieth Conference on Uncertainty in Artificial Intelligence},
  pages={829--838},
  year={2014}
}

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Contributing

Contributions and pull requests are welcome.
If you are aware of additional research using this library, please open a PR to add it to the Academic Usage section.

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License

MIT License