verkkofillet 0.1.2

verkko fillet pkg

verkko-fillet : post verkko graph and assembly cleaning in Python

verkko-fillet is an easy-to-use toolkit for cleaning Verkko assemblies. It includes tools for generating the Verkko-Fillet object, performing assembly quality checks, identifying gaps, assigning chromosomes, searching for ONT reads to help resolve gaps, filling gaps, and generating the final Rukki path (in a GAF-like format) for future Verkko CNS runs.

This Python-based implementation streamlines the entire process, starting right after the Verkko assembly is completed and preparing for the CNS run.

dependencies :

• gfacpp

Installation

Using pip is recommended. link

mamba create -n verkko-fillet python=3.9
mamba activate verkko-fillet
mamba env update --file environment.yaml
pip install verkkofillet