Naive alignment for lists of arbitrary objects
Project description
Versalign is a naive alignment tool for lists of arbitrary objects. Versalign is able to perform pairwise sequence alignments and star-based multiple sequence alignments, based on custom scoring functions. Versalign is primarily designed to align short-ish sequences.
Versalign is a Python library and has no command line interface.
Pairwise alignments, which is the core of this library, is built around Biopython's PairwiseAligner class.
Installation
The most recent code and data can be installed directly from GitHub with:
pip install git+https://github.com/moltools/versalign.git
The latest stable release can be installed from PyPI with:
pip install versalign
Versalign has been developed for Linux and MacOS.
Getting started
See the examples folder for some basic usage examples.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file versalign-2.0.1.tar.gz.
File metadata
- Download URL: versalign-2.0.1.tar.gz
- Upload date:
- Size: 41.2 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.10.19
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
c76123b2faed7198eb8a082333ca7e2725a2644c3bee2e0127154335d88b7b70
|
|
| MD5 |
d784776e21db96208c0c8ba00f5c081e
|
|
| BLAKE2b-256 |
4d6db415cc836a53885b9e18fb37099f17ebceb4fbb0142c3c549b91a78a39e8
|
File details
Details for the file versalign-2.0.1-py3-none-any.whl.
File metadata
- Download URL: versalign-2.0.1-py3-none-any.whl
- Upload date:
- Size: 3.2 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.10.19
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
d27490d0a4760fa003cff29be7a5c9f7c88eb3a2fc176fea6e909bfe18d25b4a
|
|
| MD5 |
88ef2a21d391f28a4c9dbc94ffd38622
|
|
| BLAKE2b-256 |
7e7bd0266defd3f165c327474016308cd1bfb217db9402c98b6b5d6f9b5aa614
|
