vertex-FC 0.1.1.post1

fMRI functional connectivity toolkit with GPU acceleration using torch

VERTEX: Accelerated fMRI Functional Connectivity Tools

VERTEX is a a python for functional connectivity analysis at the voxel / vertex level that utilizes pytorch for GPU speed ups and scipy sparse matrices for memory savings.

Tools:

[] list tools: vFC tools
[] clustering methods:
	[] PM: infomaps - for individual parcellations
	[] PM: with other clustering techniques
	[] PM: integrate with Sparse-Low Rank Clustering

Acceleration Effects:

Comparisons are with wb_command package (version):

Time Speed Up

[] Creating dconns:
[] Creating sparse dconns:
[] Dconn comparisons

Memory Savings

[] Creating dconns
[] Sparse dconns
[] Dconn comparisons

Storage Savings

[] Sparse dconns
[] Dconn comparisons