vexicon

About

Knowledge store MCP server.

Notes and reference material live in named spaces backed by Chroma collections. Each space also has a SQLite FTS5 keyword index, and searches fuse the vector and keyword rankings with reciprocal rank fusion, tunable through settings.

vexicon ships opinionated defaults, listed under Defaults below.

Run the server over stdio with uvx vexicon.

Add to an MCP client

The first launch downloads vexicon's dependencies, which can take longer than a client's startup timeout. Each client below shows how to raise it.

Claude Code

claude mcp add --scope user vexicon -- uvx vexicon

Pass settings with -e:

claude mcp add --scope user vexicon -e VEXICON_DEVICE=cpu -- uvx vexicon

Claude Code's startup timeout is 30 seconds. Raise it with MCP_TIMEOUT in milliseconds:

MCP_TIMEOUT=120000 claude

Codex

codex mcp add vexicon -- uvx vexicon

Pass settings with --env:

codex mcp add vexicon --env VEXICON_DEVICE=cpu -- uvx vexicon

Codex's startup timeout is 10 seconds. Raise it in ~/.codex/config.toml:

[mcp_servers.vexicon]
command = "uvx"
args = ["vexicon"]
startup_timeout_sec = 120

Settings

Compared with chroma-mcp

Compared against chroma-mcp 0.2.6 and chromadb 1.5.9.

Hybrid search without Chroma Cloud

• vexicon combines vector and BM25 keyword rankings with reciprocal rank fusion, using a SQLite FTS5 index beside each local Chroma collection.

Token usage

• vexicon's tool definitions take about 30% fewer tokens than chroma-mcp's.
• search returns at most limit entries in total, while chroma-mcp returns n_results per query, so its response grows with every query a model adds.
• Results always leave out embedding vectors, which add tokens without giving a model anything it can use.

Embedding models

• Each space can use any sentence-transformers model, and tools let a model find and download one from Hugging Face.
• Cached models load without network calls.
• Models trained with separate query and document prompts get the matching prompt for searches and for stored entries.
• Spaces always have their embedding model's max token size available in metadata for sizing entries before they are added.

Memory

• Embedding models unload from memory after VEXICON_IDLE_SECONDS without use.

Defaults

• Storage persists under ~/.vexicon by default.
• Entry IDs are kebab-case mnemonics.
• Duplicate entry IDs raise an error.
• Spaces are published as MCP resources.
• Chroma telemetry is off.

vexicon keeps its own fields in Chroma metadata:

• Each entry's metadata holds created_at in epoch seconds for recency filters in where.
• Each space's metadata holds its readme, embedding_repo_id, and embedding_max_tokens.
• Callers cannot set those three keys through a space's metadata argument.
• Tool results show these fields apart from the caller's own metadata.