Wrapper for querying VirtualFlyBrain knowledge graph.
Project description
VFBquery
to setup requirements:
pip install --upgrade vfbquery
To get term info for a term: get_term_info(ID)
e.g.
import vfbquery as vfb
Class example:
vfb.get_term_info('FBbt_00003748', force_refresh=True)
{
"Name": "medulla",
"Id": "FBbt_00003748",
"SuperTypes": [
"Entity",
"Class",
"Adult",
"Anatomy",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"Visual_system"
],
"Meta": {
"Name": "[medulla](FBbt_00003748)",
"Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
"Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
"Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
"Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
},
"Tags": [
"Adult",
"Nervous_system",
"Synaptic_neuropil_domain",
"Visual_system"
],
"Queries": [
{
"query": "ListAllAvailableImages",
"label": "List all available images of medulla",
"function": "get_instances",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Gross Types",
"type": "tags",
"order": 3
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_00102107",
"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[](VFB_00101567,VFB_00102107)"
},
{
"id": "VFB_00101385",
"label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[ on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
},
{
"id": "VFB_00030810",
"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
"thumbnail": "[](VFB_00030786,VFB_00030810)"
},
{
"id": "VFB_00030624",
"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
"thumbnail": "[](VFB_00017894,VFB_00030624)"
}
]
},
"output_format": "table",
"count": 4
},
{
"query": "NeuronsPartHere",
"label": "Neurons with some part in medulla",
"function": "get_neurons_with_part_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_20011362",
"label": "[Cm1](FBbt_20011362)",
"tags": "Adult|Cholinergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011362)"
},
{
"id": "FBbt_20011363",
"label": "[Cm10](FBbt_20011363)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011363)"
},
{
"id": "FBbt_20011364",
"label": "[Cm15](FBbt_20011364)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011364)"
},
{
"id": "FBbt_20011365",
"label": "[Cm16](FBbt_20011365)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011365)"
},
{
"id": "FBbt_20011366",
"label": "[Cm17](FBbt_20011366)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011366)"
}
]
},
"output_format": "table",
"count": 472
},
{
"query": "NeuronsSynaptic",
"label": "Neurons with synaptic terminals in medulla",
"function": "get_neurons_with_synapses_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00053385",
"label": "[medulla intrinsic neuron](FBbt_00053385)",
"tags": "Adult|Nervous_system|Neuron|Visual_system",
"thumbnail": "[](FBbt_00053385)"
},
{
"id": "FBbt_00110033",
"label": "[medulla intrinsic neuron vGlutMinew1a](FBbt_00110033)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00110142",
"label": "[OA-AL2i2](FBbt_00110142)",
"tags": "Adult|Nervous_system|Octopaminergic",
"thumbnail": "[](FBbt_00110142)"
},
{
"id": "FBbt_00110143",
"label": "[OA-AL2i3](FBbt_00110143)",
"tags": "Adult|Nervous_system|Octopaminergic|Visual_system",
"thumbnail": "[](FBbt_00110143)"
},
{
"id": "FBbt_00110144",
"label": "[OA-AL2i4](FBbt_00110144)",
"tags": "Adult|Nervous_system|Octopaminergic",
"thumbnail": "[ aligned to JRC2018U')](FBbt_00110144)"
}
]
},
"output_format": "table",
"count": 465
},
{
"query": "NeuronsPresynapticHere",
"label": "Neurons with presynaptic terminals in medulla",
"function": "get_neurons_with_presynaptic_terminals_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_02000003",
"label": "[yR8](FBbt_02000003)",
"tags": "Adult|Cholinergic|Histaminergic|Nervous_system|Sensory_neuron|Visual_system",
"thumbnail": "[ aligned to JRC2018U')](FBbt_02000003)"
},
{
"id": "FBbt_20007253",
"label": "[CB3838](FBbt_20007253)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007253)"
},
{
"id": "FBbt_20007256",
"label": "[Cm31a](FBbt_20007256)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007256)"
},
{
"id": "FBbt_20007257",
"label": "[Mi19](FBbt_20007257)",
"tags": "Adult|Nervous_system|Neuron|Visual_system",
"thumbnail": "[](FBbt_20007257)"
},
{
"id": "FBbt_20007258",
"label": "[Cm35](FBbt_20007258)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007258)"
}
]
},
"output_format": "table",
"count": 253
},
{
"query": "NeuronsPostsynapticHere",
"label": "Neurons with postsynaptic terminals in medulla",
"function": "get_neurons_with_postsynaptic_terminals_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_20007253",
"label": "[CB3838](FBbt_20007253)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007253)"
},
{
"id": "FBbt_20007256",
"label": "[Cm31a](FBbt_20007256)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007256)"
},
{
"id": "FBbt_20007257",
"label": "[Mi19](FBbt_20007257)",
"tags": "Adult|Nervous_system|Neuron|Visual_system",
"thumbnail": "[](FBbt_20007257)"
},
{
"id": "FBbt_20007258",
"label": "[Cm35](FBbt_20007258)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007258)"
},
{
"id": "FBbt_20007259",
"label": "[Cm32](FBbt_20007259)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007259)"
}
]
},
"output_format": "table",
"count": 331
},
{
"query": "PartsOf",
"label": "Parts of medulla",
"function": "get_parts_of",
"takes": {
"short_form": {
"$and": [
"Class"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00003750",
"label": "[medulla layer M1](FBbt_00003750)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003753",
"label": "[medulla layer M4](FBbt_00003753)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003754",
"label": "[medulla layer M5](FBbt_00003754)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003758",
"label": "[medulla layer M8](FBbt_00003758)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003759",
"label": "[medulla layer M9](FBbt_00003759)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
}
]
},
"output_format": "table",
"count": 28
},
{
"query": "SubclassesOf",
"label": "Subclasses of medulla",
"function": "get_subclasses_of",
"takes": {
"short_form": {
"$and": [
"Class"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
}
},
"output_format": "table",
"count": 0
},
{
"query": "TractsNervesInnervatingHere",
"label": "Tracts/nerves innervating medulla",
"function": "get_tracts_nerves_innervating_here",
"takes": {
"short_form": {
"$or": [
{
"$and": [
"Class",
"Synaptic_neuropil"
]
},
{
"$and": [
"Class",
"Synaptic_neuropil_domain"
]
}
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00003922",
"label": "[second optic chiasma](FBbt_00003922)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00005810",
"label": "[first optic chiasma](FBbt_00005810)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00007427",
"label": "[posterior optic commissure](FBbt_00007427)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle",
"thumbnail": "[](FBbt_00007427)"
}
]
},
"output_format": "table",
"count": 3
},
{
"query": "LineageClonesIn",
"label": "Lineage clones found in medulla",
"function": "get_lineage_clones_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Synaptic_neuropil"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00050013",
"label": "[adult VPNl&d1 lineage clone](FBbt_00050013)",
"tags": "Adult|Clone",
"thumbnail": "[](FBbt_00050013)"
},
{
"id": "FBbt_00050019",
"label": "[adult DM1 lineage clone](FBbt_00050019)",
"tags": "Adult|Clone|lineage_DPMm1",
"thumbnail": "[](FBbt_00050019)"
},
{
"id": "FBbt_00050051",
"label": "[adult VESa2 lineage clone](FBbt_00050051)",
"tags": "Adult|Clone|lineage_BAlp1",
"thumbnail": "[](FBbt_00050051)"
},
{
"id": "FBbt_00050167",
"label": "[adult LALv1 lineage clone](FBbt_00050167)",
"tags": "Adult|Clone|lineage_BAmv1",
"thumbnail": "[](FBbt_00050167)"
},
{
"id": "FBbt_00050229",
"label": "[adult SLPpl1 lineage clone](FBbt_00050229)",
"tags": "Adult|Clone|lineage_DPLl1",
"thumbnail": "[](FBbt_00050229)"
}
]
},
"output_format": "table",
"count": 7
},
{
"query": "ImagesNeurons",
"label": "Images of neurons with some part in medulla",
"function": "get_images_neurons",
"takes": {
"short_form": {
"$or": [
{
"$and": [
"Class",
"Synaptic_neuropil"
]
},
{
"$and": [
"Class",
"Synaptic_neuropil_domain"
]
}
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_fw113167",
"label": "[ME.11974](VFB_fw113167)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": ""
},
{
"id": "VFB_fw113165",
"label": "[ME.17216](VFB_fw113165)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system|secondary_neuron",
"thumbnail": ""
},
{
"id": "VFB_fw113168",
"label": "[ME.31287](VFB_fw113168)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": ""
},
{
"id": "VFB_fw113166",
"label": "[ME.4619](VFB_fw113166)",
"tags": "Adult|Cholinergic|Nervous_system|Visual_system|secondary_neuron",
"thumbnail": ""
},
{
"id": "VFB_fw113169",
"label": "[ME.26172](VFB_fw113169)",
"tags": "Adult|Cholinergic|Nervous_system|Visual_system|secondary_neuron",
"thumbnail": ""
}
]
},
"output_format": "table",
"count": 119989
},
{
"query": "ExpressionOverlapsHere",
"label": "Expression patterns overlapping medulla",
"function": "get_expression_overlaps_here",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"name",
"tags",
"pubs"
],
"preview_results": {
"headers": {
"id": {
"title": "ID",
"type": "selection_id",
"order": -1
},
"name": {
"title": "Expression Pattern",
"type": "markdown",
"order": 0
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 1
},
"pubs": {
"title": "Publications",
"type": "metadata",
"order": 2
}
},
"rows": [
{
"id": "VFBexp_FBti0182065",
"name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0230454",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0230454",
"label": "Carrillo et al., 2015, Cell 163(7): 1770--1782"
},
"FlyBase": "FBrf0230454",
"PubMed": "26687361",
"DOI": "10.1016/j.cell.2015.11.022"
}
]
},
{
"id": "VFBexp_FBti0145260",
"name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0230454",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0230454",
"label": "Carrillo et al., 2015, Cell 163(7): 1770--1782"
},
"FlyBase": "FBrf0230454",
"PubMed": "26687361",
"DOI": "10.1016/j.cell.2015.11.022"
}
]
},
{
"id": "VFBexp_FBti0143533",
"name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0215202",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0215202",
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
},
"FlyBase": "FBrf0215202",
"PubMed": "",
"DOI": ""
}
]
},
{
"id": "VFBexp_FBti0143547",
"name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0215202",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0215202",
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
},
"FlyBase": "FBrf0215202",
"PubMed": "",
"DOI": ""
}
]
},
{
"id": "VFBexp_FBti0143524",
"name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0215202",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0215202",
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
},
"FlyBase": "FBrf0215202",
"PubMed": "",
"DOI": ""
}
]
}
]
},
"output_format": "table",
"count": 2339
},
{
"query": "TransgeneExpressionHere",
"label": "Transgene expression in medulla",
"function": "get_transgene_expression_here",
"takes": {
"short_form": {
"$and": [
"Class",
"Nervous_system",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"name",
"tags"
],
"preview_results": {
"headers": {
"id": {
"title": "ID",
"type": "selection_id",
"order": -1
},
"name": {
"title": "Expression Pattern",
"type": "markdown",
"order": 0
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 1
}
},
"rows": [
{
"id": "VFBexp_FBti0182065",
"name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
"tags": "Expression_pattern"
},
{
"id": "VFBexp_FBti0145260",
"name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
"tags": "Expression_pattern"
},
{
"id": "VFBexp_FBti0143533",
"name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
"tags": "Expression_pattern"
},
{
"id": "VFBexp_FBti0143547",
"name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
"tags": "Expression_pattern"
},
{
"id": "VFBexp_FBti0143524",
"name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
"tags": "Expression_pattern"
}
]
},
"output_format": "table",
"count": 2339
}
],
"IsIndividual": False,
"IsClass": True,
"Examples": {
"VFB_00101384": [
{
"id": "VFB_00101385",
"label": "ME(R) on JRC_FlyEM_Hemibrain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
}
],
"VFB_00101567": [
{
"id": "VFB_00102107",
"label": "ME on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj"
}
],
"VFB_00017894": [
{
"id": "VFB_00030624",
"label": "medulla on adult brain template JFRC2",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
}
],
"VFB_00030786": [
{
"id": "VFB_00030810",
"label": "medulla on adult brain template Ito2014",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
}
]
},
"IsTemplate": False,
"Synonyms": [
{
"label": "ME",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Ito et al., 2014](FBrf0224194)"
},
{
"label": "Med",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Chiang et al., 2011](FBrf0212704)"
},
{
"label": "optic medulla",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
},
{
"label": "m",
"scope": "has_related_synonym",
"type": "",
"publication": ""
}
]
}
Individual example:
vfb.get_term_info('VFB_00000001')
{
"Name": "fru-M-200266",
"Id": "VFB_00000001",
"SuperTypes": [
"Entity",
"Individual",
"VFB",
"Neuron",
"Adult",
"Anatomy",
"Cell",
"Expression_pattern_fragment",
"Nervous_system",
"has_image",
"lineage_CM3",
"lineage_DM6",
"FlyCircuit",
"NBLAST"
],
"Meta": {
"Name": "[fru-M-200266](VFB_00000001)",
"Description": "",
"Comment": "OutAge: Adult 5~15 days",
"Types": "[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)",
"Relationships": "[expresses](RO_0002292): [Scer\\GAL4%5Bfru.P1.D%5D](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4%5Bfru.P1.D%5D expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)"
},
"Tags": [
"Adult",
"Expression_pattern_fragment",
"Neuron",
"lineage_CM3"
],
"Queries": [
{
"query": "SimilarMorphologyTo",
"label": "Find similar neurons to fru-M-200266",
"function": "get_similar_neurons",
"takes": {
"short_form": {
"$and": [
"Individual",
"Neuron"
]
},
"default": {
"neuron": "VFB_00000001",
"similarity_score": "NBLAST_score"
}
},
"preview": 5,
"preview_columns": [
"id",
"score",
"name",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"score": {
"title": "Score",
"type": "numeric",
"order": 1,
"sort": {
"0": "Desc"
}
},
"name": {
"title": "Name",
"type": "markdown",
"order": 1,
"sort": {
"1": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_00000333",
"score": "0.61",
"name": "[fru-M-000204](VFB_00000333)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00017894,VFB_00000333)"
},
{
"id": "VFB_00000333",
"score": "0.61",
"name": "[fru-M-000204](VFB_00000333)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00101567,VFB_00000333)"
},
{
"id": "VFB_00002439",
"score": "0.6",
"name": "[fru-M-900020](VFB_00002439)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00101567,VFB_00002439)"
},
{
"id": "VFB_00002439",
"score": "0.6",
"name": "[fru-M-900020](VFB_00002439)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00017894,VFB_00002439)"
},
{
"id": "VFB_00000845",
"score": "0.59",
"name": "[fru-M-100191](VFB_00000845)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[](VFB_00101567,VFB_00000845)"
}
]
},
"output_format": "table",
"count": 60
}
],
"IsIndividual": True,
"Images": {
"VFB_00017894": [
{
"id": "VFB_00000001",
"label": "fru-M-200266",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
}
],
"VFB_00101567": [
{
"id": "VFB_00000001",
"label": "fru-M-200266",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
}
]
},
"IsClass": False,
"IsTemplate": False,
"Licenses": {
"0": {
"iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
"short_form": "VFBlicense_FlyCircuit_License",
"label": "FlyCircuit License",
"icon": "",
"source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
"source_iri": "http://virtualflybrain.org/reports/Chiang2010"
}
}
}
Template example:
vfb.get_term_info('VFB_00101567')
{
"Name": "JRC2018U",
"Id": "VFB_00101567",
"SuperTypes": [
"Entity",
"Individual",
"VFB",
"Adult",
"Anatomy",
"Nervous_system",
"Template",
"has_image"
],
"Meta": {
"Name": "[JRC2018Unisex](VFB_00101567)",
"Symbol": "[JRC2018U](VFB_00101567)",
"Description": "Janelia 2018 unisex, averaged adult brain template",
"Comment": "",
"Types": "[adult brain](FBbt_00003624)"
},
"Tags": [
"Adult",
"Nervous_system"
],
"Queries": [],
"IsIndividual": True,
"Images": {
"VFB_00101567": [
{
"id": "VFB_00101567",
"label": "JRC2018Unisex",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
"index": 0,
"center": {
"X": 605.0,
"Y": 283.0,
"Z": 87.0
},
"extent": {
"X": 1211.0,
"Y": 567.0,
"Z": 175.0
},
"voxel": {
"X": 0.5189161,
"Y": 0.5189161,
"Z": 1.0
},
"orientation": "LPS"
}
]
},
"IsClass": False,
"Examples": {},
"IsTemplate": True,
"Domains": {
"0": {
"id": "VFB_00101567",
"label": "JRC2018U",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj",
"index": 0,
"type_label": "adult brain",
"type_id": "FBbt_00003624"
},
"3": {
"id": "VFB_00102107",
"label": "ME on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj",
"index": 3,
"type_label": "medulla",
"type_id": "FBbt_00003748"
},
"4": {
"id": "VFB_00102108",
"label": "AME on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/volume_man.obj",
"index": 4,
"type_label": "accessory medulla",
"type_id": "FBbt_00045003"
},
"5": {
"id": "VFB_00102109",
"label": "LO on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/volume_man.obj",
"index": 5,
"type_label": "lobula",
"type_id": "FBbt_00003852"
},
"6": {
"id": "VFB_00102110",
"label": "LOP on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/volume_man.obj",
"index": 6,
"type_label": "lobula plate",
"type_id": "FBbt_00003885"
},
"7": {
"id": "VFB_00102114",
"label": "CA on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/volume_man.obj",
"index": 7,
"type_label": "calyx of adult mushroom body",
"type_id": "FBbt_00007385"
},
"10": {
"id": "VFB_00102118",
"label": "PED on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/volume_man.obj",
"index": 10,
"type_label": "pedunculus of adult mushroom body",
"type_id": "FBbt_00007453"
},
"11": {
"id": "VFB_00102119",
"label": "aL on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/volume_man.obj",
"index": 11,
"type_label": "adult mushroom body alpha-lobe",
"type_id": "FBbt_00110657"
},
"12": {
"id": "VFB_00102121",
"label": "a\\'L on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/volume_man.obj",
"index": 12,
"type_label": "adult mushroom body alpha'-lobe",
"type_id": "FBbt_00013691"
},
"13": {
"id": "VFB_00102123",
"label": "bL on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/volume_man.obj",
"index": 13,
"type_label": "adult mushroom body beta-lobe",
"type_id": "FBbt_00110658"
},
"14": {
"id": "VFB_00102124",
"label": "b\\'L on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/thumbnail.png",
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"type_label": "saddle",
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"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnailT.png",
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"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/volume_man.obj",
"index": 46,
"type_label": "antennal mechanosensory and motor center",
"type_id": "FBbt_00003982"
},
"47": {
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"label": "FLA on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/volume_man.obj",
"index": 47,
"type_label": "flange",
"type_id": "FBbt_00045050"
},
"48": {
"id": "VFB_00102275",
"label": "CAN on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/volume_man.obj",
"index": 48,
"type_label": "cantle",
"type_id": "FBbt_00045051"
},
"49": {
"id": "VFB_00102276",
"label": "PRW on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/volume.nrrd",
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"index": 49,
"type_label": "prow",
"type_id": "FBbt_00040051"
},
"50": {
"id": "VFB_00102280",
"label": "GNG on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/volume_man.obj",
"index": 50,
"type_label": "adult gnathal ganglion",
"type_id": "FBbt_00014013"
},
"59": {
"id": "VFB_00102281",
"label": "GA on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnailT.png",
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"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/volume.wlz",
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"index": 59,
"type_label": "gall",
"type_id": "FBbt_00040060"
},
"94": {
"id": "VFB_00102282",
"label": "NO on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnailT.png",
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"index": 94,
"type_label": "nodulus",
"type_id": "FBbt_00003680"
}
},
"Licenses": {
"0": {
"iri": "http://virtualflybrain.org/reports/VFBlicense_CC_BY_NC_SA_4_0",
"short_form": "VFBlicense_CC_BY_NC_SA_4_0",
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}
Queries:
vfb.get_instances('FBbt_00003748', return_dataframe=False)
{
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
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"type": "markdown",
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},
"parent": {
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"type": "markdown",
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},
"template": {
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"type": "markdown",
"order": 4
},
"tags": {
"title": "Gross Types",
"type": "tags",
"order": 3
},
"source": {
"title": "Data Source",
"type": "markdown",
"order": 5
},
"source_id": {
"title": "Data Source",
"type": "markdown",
"order": 6
},
"dataset": {
"title": "Dataset",
"type": "markdown",
"order": 7
},
"license": {
"title": "License",
"type": "markdown",
"order": 8
},
"thumbnail": {
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"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_00102107",
"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"parent": "[medulla](FBbt_00003748)",
"source": "",
"source_id": "",
"template": "[JRC2018U](VFB_00101567)",
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
"license": "",
"thumbnail": "[](VFB_00101567,VFB_00102107)"
},
{
"id": "VFB_00101385",
"label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"parent": "[medulla](FBbt_00003748)",
"source": "",
"source_id": "",
"template": "[JRCFIB2018Fum](VFB_00101384)",
"dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
"license": "",
"thumbnail": "[ on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)"
},
{
"id": "VFB_00030810",
"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
"parent": "[medulla](FBbt_00003748)",
"source": "",
"source_id": "",
"template": "[adult brain template Ito2014](VFB_00030786)",
"dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
"license": "",
"thumbnail": "[](VFB_00030786,VFB_00030810)"
},
{
"id": "VFB_00030624",
"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
"parent": "[medulla](FBbt_00003748)",
"source": "",
"source_id": "",
"template": "[JFRC2](VFB_00017894)",
"dataset": "[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)](JenettShinomya_BrainName)",
"license": "",
"thumbnail": "[](VFB_00017894,VFB_00030624)"
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],
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vfb.get_templates(return_dataframe=False)
{
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},
"order": {
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},
"thumbnail": {
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"type": "markdown",
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},
"dataset": {
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"type": "metadata",
"order": 3
},
"license": {
"title": "License",
"type": "metadata",
"order": 4
}
},
"rows": [
{
"id": "VFB_00200000",
"order": 2,
"name": "[JRCVNC2018U](VFB_00200000)",
"tags": "Nervous_system|Adult|Ganglion",
"thumbnail": "[](VFB_00200000)",
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
},
{
"id": "VFB_00120000",
"order": 10,
"name": "[Adult T1 Leg (Kuan2020)](VFB_00120000)",
"tags": "Adult|Anatomy",
"thumbnail": "[')](VFB_00120000)",
"dataset": "[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)",
"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
},
{
"id": "VFB_00110000",
"order": 9,
"name": "[Adult Head (McKellar2020)](VFB_00110000)",
"tags": "Adult|Anatomy",
"thumbnail": "[')](VFB_00110000)",
"dataset": "[GAL4 lines from McKellar et al., 2020](McKellar2020)",
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
},
{
"id": "VFB_00101567",
"order": 1,
"name": "[JRC2018U](VFB_00101567)",
"tags": "Nervous_system|Adult",
"thumbnail": "[](VFB_00101567)",
"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
},
{
"id": "VFB_00101384",
"order": 4,
"name": "[JRCFIB2018Fum](VFB_00101384)",
"tags": "Nervous_system|Adult",
"thumbnail": "[](VFB_00101384)",
"dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
},
{
"id": "VFB_00100000",
"order": 7,
"name": "[COURT2018VNS](VFB_00100000)",
"tags": "Nervous_system|Adult|Ganglion",
"thumbnail": "[](VFB_00100000)",
"dataset": "[Adult VNS neuropils (Court2017)](Court2017)",
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
},
{
"id": "VFB_00050000",
"order": 5,
"name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
"tags": "Nervous_system|Larva",
"thumbnail": "[](VFB_00050000)",
"dataset": "[larval hugin neurons - EM (Schlegel2016)](Schlegel2016), [Neurons involved in larval fast escape response - EM (Ohyama2016)](Ohyama2015)",
"license": "[CC_BY](VFBlicense_CC_BY_4_0), [CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
},
{
"id": "VFB_00049000",
"order": 6,
"name": "[L3 CNS template - Wood2018](VFB_00049000)",
"tags": "Nervous_system|Larva",
"thumbnail": "[](VFB_00049000)",
"dataset": "[L3 Larval CNS Template (Truman2016)](Truman2016)",
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
},
{
"id": "VFB_00030786",
"order": 8,
"name": "[adult brain template Ito2014](VFB_00030786)",
"tags": "Nervous_system|Adult",
"thumbnail": "[](VFB_00030786)",
"dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
},
{
"id": "VFB_00017894",
"order": 3,
"name": "[JFRC2](VFB_00017894)",
"tags": "Nervous_system|Adult",
"thumbnail": "[](VFB_00017894)",
"dataset": "[FlyLight - GMR GAL4 collection (Jenett2012)](Jenett2012)",
"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
}
],
"count": 10
}
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