vfdbQuery

Requirements

Python 3.6
ncbi-blast+ (makeblastdb and blastn must be in your $PATH)

Installation

pip install vfdbQuery

Usage

Usage: vfdbQuery [OPTIONS]

  vfdbQuery is a simple script for querying an input genome assembly against
  the Virulence Factor Database (VFDB).

Options:
  -i, --infile PATH     FASTA file that you want to search against VFDB
                        [required]
  -db, --database PATH  Path to Virulence Factor Database (VFDB)  [required]
  --help                Show this message and exit.

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Source Distribution

vfdbQuery-0.0.5.tar.gz (4.3 kB view details)

Uploaded Feb 1, 2019 Source

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