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Package for quickly querying an assembly against the VFDB

Project description



  • Python 3.6
  • ncbi-blast+ (makeblastdb and blastn must be in your $PATH)


pip install vfdbQuery


Usage: vfdbQuery [OPTIONS]

  vfdbQuery is a simple script for querying an input genome assembly against
  the Virulence Factor Database (VFDB).

  -i, --infile PATH     FASTA file that you want to search against VFDB
  -db, --database PATH  Path to Virulence Factor Database (VFDB)  [required]
  --help                Show this message and exit.

Project details

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Files for vfdbQuery, version 0.0.5
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