Skip to main content

Package for quickly querying an assembly against the VFDB

Project description



  • Python 3.6
  • ncbi-blast+ (makeblastdb and blastn must be in your $PATH)


pip install vfdbQuery


Usage: vfdbQuery [OPTIONS]

  vfdbQuery is a simple script for querying an input genome assembly against
  the Virulence Factor Database (VFDB).

  -i, --infile PATH     FASTA file that you want to search against VFDB
  -db, --database PATH  Path to Virulence Factor Database (VFDB)  [required]
  --help                Show this message and exit.

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for vfdbQuery, version 0.0.5
Filename, size File type Python version Upload date Hashes
Filename, size vfdbQuery-0.0.5.tar.gz (4.3 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page