vfdbQuery
Requirements
- Python 3.6
- ncbi-blast+ (makeblastdb and blastn must be in your $PATH)
Installation
pip install vfdbQuery
Usage
Usage: vfdbQuery [OPTIONS]
vfdbQuery is a simple script for querying an input genome assembly against
the Virulence Factor Database (VFDB).
Options:
-i, --infile PATH FASTA file that you want to search against VFDB
[required]
-db, --database PATH Path to Virulence Factor Database (VFDB) [required]
--help Show this message and exit.
1 maintainer
Metadata
1 maintainer
Release files for vfdbQuery 0.0.5
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| vfdbQuery-0.0.5.tar.gz | 4.3 kB | Without provenance | Details for vfdbQuery-0.0.5.tar.gz |
Release files / vfdbQuery-0.0.5.tar.gz
| Download URL | vfdbQuery-0.0.5.tar.gz |
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| Size | 4.3 kB |
| Tags | Source |
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