viro-seq-utils 1.2.1

Utilities modules for sequences, alignments and phylogeny from Toulouse virology laboratory.

Sequence, alignments and phylogeny utilities

Python package providing utilities for:

• sequences (nucleotides or amino acids)
• alignments
• phylogeny

Creating the pip package and upload

See Generating distribution archive from this page.

Go to the directory containing the *.toml file and run:

python3 -m pip install --upgrade build

python3 -m build

Upload of the new or updated package

upload to the TestPyPi repository

Use Twine to upload the new package or the new version of the package to TestPyPi:

python3 -m twine upload --repository testpypi dist/*

When prompted for the username, enter __token__ and for password of the token: pypi-AgENdGVzdC5weXBpLm9yZwIkZWQ4OGM3MTAtZDM4Yy00MzI0LTgzZTgtYjdkNTRjNzM3ODgxAAIleyJwZXJtaXNzaW9ucyI6ICJ1c2VyIiwgInZlcnNpb24iOiAxfQAABiCvPdEuI67P7t9GPsxT32wekLrsotDZox91PQYrGUpzuQ.

To test if the package is correctly uploaded and functional, create a virtual env and install the package.

# virtual env
python3 -m venv test_env
source test_env/bin/activate

# download package
python -m pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple viro-seq-utils

# launch Python
python

Test the package:

from viro_seq_utils import aln_utils

The upload is OK if no error message is displayed.

Remove the virtual environment:

deactivate

rm -r test_env/

upload to the PyPi repository

Use Twine to upload the new package or the new version of the package to PyPi:

python3 -m twine upload dist/*

When prompted for user name, enter __token__ and for password of the token: pypi-AgEIcHlwaS5vcmcCJDQ5OGM0Mjg0LTg4NWUtNDFkMy1hM2E4LTJkOWExMWY2YWFiNwACJXsicGVybWlzc2lvbnMiOiAidXNlciIsICJ2ZXJzaW9uIjogMX0AAAYg_sL0lCguZppaM5q9zYciijuwH3tPz_KQtQE07S5Sg0U