vivarium-gbd-mapping

Mapping of Global Burden of Disease (GBD) entities to their metadata.

The mapping modules are generated from GBD data by a separate, IHME-internal package, vivarium-gbd-mapping-generator, which requires access to the IHME cluster and some of our internally used data-access libraries. Mapping updates are managed by a maintainer toolchain, so this shouldn’t be an issue for consumers of this package.

The gbd_mapping is a programmatically accessible (and TAB-complete-able) set of mappings for GBD entities including:

Causes

Risks

Covariates

Etiologies

Sequelae

Supported Python versions: 3.10, 3.11

You can install vivarium-gbd-mapping from PyPI with pip:

pip install vivarium-gbd-mapping

or build it from source by cloning the monorepo and installing this package:

git clone https://github.com/ihmeuw/vivarium-suite.git
cd vivarium-suite
pip install libs/gbd-mapping

Development

Set up this library in development mode with

git clone https://github.com/ihmeuw/vivarium-suite.git
cd vivarium-suite
pip install -e 'libs/gbd-mapping[dev]'

To regenerate the mapping modules, see the vivarium-gbd-mapping-generator package.

Check out the docs!

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