vizibridge 0.3.0

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Vizibridge

This module is a maturin bridge between the rust crate vizicomp containing compiled code for efficient genomic data manipulation in the Python module Vizitig

How to install vizibrdige

The simplest way is to use pip as vizibridge is deploy in Pypi:

pip install vizibridge

Alternative, download the wheel from the latest release obtained from gitlab

In the case where your architecture/systems is not presents, it is possible to compile it locally as well as follows.

First install the rust tool chain and then run

cargo install maturin
maturin build --release

To install the module in your python then run

pip install target/wheels/vizibridge**.whl

replacing ** by the appropriate name generated in the folder.

How-to modifiate this https://gitlab.inria.fr/cpaperma/vizibridge/-/releases/permalink/latestmodule

The CI/CD takes care to compiling everything so you can simply push the content to create a new compiled module. To publish to Pypi, simply push a release tag:

git tag -d vx -m "Some description of the release to broadcast
git push origin vx 

Here vx is the version number that should be sync with the version declared in the Cargo.toml.

What should be here

The actual computing content should never been performed within this repo but always either in vizicomp repo or through another repo that we would like to have exposed in the Python ecosystem. This repo is solely dedicated to performing the bridge without polluting efficient standalone Rust tooling.

TODO

• Add in the CI/CD windows and MacOS compilations
• Integrate ggcat binding
• Other tools?