A package for common blockwise computations for large microscopy volumes.
Project description
volara
Easy application of common blockwise operations for image processing of arbitrarily large volumetric microscopy.
Available blockwise operations:
FragmentExtraction: Fragment extraction via mutex watershedAffAgglom: Supervoxel affinity score edge creationArgMax: Argmax accross predicted probabilitiesDistanceAgglom: Supervoxel distance score edge creationGlobalSeg: Global creation of look up tables for fragment -> segment agglomerationLUT: Remapping and saving fragments as segmentsSeededExtractFrags: Fragment extraction via mutex watershed that accepts skeletonized seed points for constrained fragment extraction
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