volsegtools 0.1.0

No project description provided

VolSeg Tools

A library used for processing of volumes and segmentations.

Instalation

If you cannot, or don't want to use the PyPi Package, you can install the project locally using uv:

    git clone https://github.com/DanielKriz/volseg-tools
    cd volseg-tools
    uv init
    uv venv
    source .venv/bin/activate
    uv pip install .

Usage

The library is intended for definition of processing pipelines for volumetric data and segmentations.

Next to that a CLI preprocessing application is provided. After the installation you can run:

molstar-preprocessor --help

Support

Input Formats

• MRC
• NiBabel
• SFF
• Imaris Bitplane
• STL, OBJ, PLY
• VRML
• OME-TIFF
• OME-NGFF

Serialization Formats

• MRC
• BCIF

Bundling Formats

• MVSX
• Zip per resolution
• Zip

License

This project is licensed under the MIT. See the LICENSE for more information.