Voxio: I/O package for 3D images
Usage
- Read images in parallel with
simple_read_images(image_paths); convenience function with findersimple_find_read_images(image_directory, image_format) - Read volumes that would require more than system memory in chunks, use reader to perform compute/analysis
chunk_read_stack_images(image_paths, image_reader) - Remove artifacts from volume with single object
clear_everything_but_largest_object(image_paths, output_directory) - Alternative to
scipy.ndimage.labelfor situations with insufficient memorylabel_binary_image(image_paths, output_directory) - Interpolate along the first dimension (z-axis)
morphological_interpolation_max_resolution_spacing(labeled_stack, ceiled_inter_stack_voxel_distance)
Installation
pip install voxio
1 maintainer
Metadata
1 maintainer
Release files for voxio 1.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| voxio-1.0.1.tar.gz | 14.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| voxio-1.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 32.8 kB
Release files / voxio-1.0.1.tar.gz
| Download URL | voxio-1.0.1.tar.gz |
|---|---|
| Size | 14.3 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / voxio-1.0.1-py3-none-any.whl
| Download URL | voxio-1.0.1-py3-none-any.whl |
|---|---|
| Size | 18.6 kB |
| Tags | Python 3 |
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