Well Plate (well_plate)

Makes nice visualizations of well plates!

Installation

pip install well_plate

Dependencies

numpy

pandas

plotly

Options

• Well numbers

  • 6
  • 12
  • 24
  • 96
  • 384
  • To add more see well_plate/config.py

• Well shape

  • 'circle'
  • 'rect' (square)

• Add data

  • use wp.add_data(); pass in a pd.Series with the index corresponding to well plate index (eg. "A1", "E4", ...)

Example

Basic example

    import well_plate

    wp = well_plate.WellPlate(24)
    wp.plot()

Change well size

    import well_plate

    wp = well_plate.WellPlate(96, "rect")
    wp.plot()

Add data

    import pandas as pd    
    import well_plate

    wp = well_plate.WellPlate(384, "rect")
    
    df = pd.read_csv("example1_data.csv", index_col=0)
    wp.add_data(df["mw_n"])
    
    wp.plot(key="mw_n")
    wp.heatmap(key="mw_n")