wols 0.1.1

WeMush Open Labeling Standard (WOLS) Python library

WOLS - WeMush Open Labeling Standard

The official Python implementation of the WeMush Open Labeling Standard (WOLS) v1.1.0 for specimen tracking in mushroom cultivation.

Features

• Core Module: Create, parse, validate, and serialize specimen labels
• QR Codes: Generate and scan QR codes (PNG, SVG, base64)
• Encryption: AES-256-GCM encryption for sensitive data
• CLI: Command-line interface for all operations
• Type Safe: Full type annotations with PEP 561 support

Installation

Basic Installation (Core Only)

# Using UV (recommended)
uv add wols

# Using pip
pip install wols

With Optional Features

# QR code support
uv add "wols[qr]"

# CLI support
uv add "wols[cli]"

# Encryption support
uv add "wols[crypto]"

# Everything
uv add "wols[all]"

Requirements

• Python 3.12 or later
• No required dependencies for core module

Container Image

The WOLS CLI is also available as a container image:

# Pull the latest image
docker pull ghcr.io/wemush/specimen-labels-py:latest

# Run the CLI
docker run --rm ghcr.io/wemush/specimen-labels-py --version

# Create a specimen
docker run --rm ghcr.io/wemush/specimen-labels-py create \
  --species "Pleurotus ostreatus" \
  --type SUBSTRATE \
  --json

# Validate a specimen (mount local file)
docker run --rm -v $(pwd):/data ghcr.io/wemush/specimen-labels-py \
  validate /data/specimen.json

# Generate QR code
docker run --rm -v $(pwd):/data ghcr.io/wemush/specimen-labels-py \
  qr /data/specimen.json --output /data/label.png

Quick Examples

Create a Specimen (Library)

from wols import create_specimen, SpecimenType, GrowthStage, to_json

# Create a specimen
specimen = create_specimen(
    type=SpecimenType.SUBSTRATE,
    species="Pleurotus ostreatus",
    strain="Blue Oyster",
    stage=GrowthStage.COLONIZATION,
    batch="BATCH-2026-001",
)

# Print the ID
print(f"Created: {specimen.id}")
# Output: Created: wemush:clx1abc123def456

# Serialize to JSON-LD
json_str = to_json(specimen, indent=2)
print(json_str)

Create a Specimen (CLI)

wols create \
  --species "Pleurotus ostreatus" \
  --type SUBSTRATE \
  --strain "Blue Oyster" \
  --stage COLONIZATION \
  --output specimen.json

Generate QR Code (Library)

from wols import create_specimen, SpecimenType
from wols.qr import generate_qr_png

specimen = create_specimen(
    type=SpecimenType.SUBSTRATE,
    species="Pleurotus ostreatus",
)

# Generate QR code
qr_bytes = generate_qr_png(specimen)

# Save to file
with open("label.png", "wb") as f:
    f.write(qr_bytes)

Validate Specimen (Library)

from wols import validate_specimen, parse_specimen

json_str = '{"@context": "...", "@type": "Specimen", ...}'
specimen = parse_specimen(json_str)

result = validate_specimen(specimen)
if result.valid:
    print("Valid specimen!")
else:
    for error in result.errors:
        print(f"{error.path}: {error.message}")

Validate Specimen (CLI)

wols validate specimen.json

Verification

After installation, verify the library works:

# Check version
python -c "import wols; print(wols.__version__)"

# Check CLI (if installed)
wols --version

# Run a quick test
python -c "
from wols import create_specimen, SpecimenType, to_json
s = create_specimen(type=SpecimenType.CULTURE, species='Test')
print('Success:', s.id)
"

Documentation

• Full API Documentation
• CLI Reference
• Data Model
• Quickstart Guide

Development

# Clone the repository
git clone https://github.com/wemush/specimen-labels-py.git
cd specimen-labels-py

# Install with development dependencies
uv sync --all-extras

# Run tests
uv run pytest

# Run linting
uv run ruff check src tests
uv run ruff format --check src tests

# Run type checking
uv run mypy src

License

Apache 2.0 License - see LICENSE for details.