xc-dl 0.1.2

Xeno-Canto bioacoustic corpus downloader for deep learning research

xc-dl

A high-performance, async command-line tool for downloading and curating bioacoustic datasets from Xeno-canto for deep learning research.

xc-dl handles metadata fetching, concurrent audio downloads, format conversion (via ffmpeg), integrity verification, and HPC-scale distributed workflows -- all with resume support and progress tracking.

Installation

pip install xc-dl

Or with uv:

uv add xc-dl

Requirements

• Python 3.9+
• A Xeno-canto API key (free)
• ffmpeg (optional, required for audio conversion)

Quick Start

# Set your API key
export XC_API_KEY="your-key-here"

# Preview a query (shows species, quality, duration stats)
xc-dl search 'grp:birds cnt:"South Africa" q:">C"' --full

# Download all matching recordings
xc-dl download 'grp:birds cnt:"South Africa" q:">C"'

# Download and convert to 16kHz mono WAV
xc-dl download 'grp:birds cnt:"South Africa" q:">C"' --convert wav

# Download a 10% random sample (deterministic)
xc-dl download 'grp:birds cnt:"South Africa"' --portion 10

# Cap total download size
xc-dl download 'grp:birds' --max-storage 500GB

# Verify dataset integrity
xc-dl check --all --report status.json

# Re-download corrupted or missing files
xc-dl check --all --fix

Configuration

xc-dl reads configuration from a YAML file (default: ./xc-dl.yaml), environment variables, and CLI flags. CLI flags take highest precedence.

Config File

general:
  api_key: "your-key"
  data_dir: "./xc-dataset"
  concurrency: 8
  metadata_concurrency: 4
  rate_limit: 5.0
  log_level: "INFO"
  log_file: "./download.log"

download:
  convert: "wav"
  convert_sample_rate: 16000
  convert_channels: 1
  convert_bit_depth: 16
  max_retries: 3

queries:
  south_africa_birds:
    query: 'grp:birds cnt:"South Africa" q:">C"'
    description: "South African birds, quality > C"

Environment Variables

Variable	Description
XC_API_KEY	Xeno-canto API key (overrides config file)

CLI Options Reference

Option	Default	Description
--config, -c	./xc-dl.yaml	Path to config file
--data-dir, -d	./xc-dataset	Root output directory
--api-key		XC API key
--log-level	INFO	Logging verbosity (DEBUG/INFO/WARNING/ERROR)
--log-file		JSON-lines log file path
--concurrency, -j	8	Max download parallelism
--metadata-concurrency	4	Max API fetch parallelism
--rate-limit	5.0	Max API requests/sec
--verbose, -v	off	Show log output on console
--dry-run	off	Show plan without executing
--version, -V		Show version

Subcommands

search

Preview a query without downloading. Shows species counts, quality distribution, recording types, estimated duration, and disk usage.

xc-dl search 'gen:Tyto sp:alba' --full
xc-dl search 'grp:birds cnt:Brazil' --format json
xc-dl search 'en:"Common Ostrich"' --save-query ostrich

Option	Description
--full	Fetch all pages for exact statistics
--format	Output format: table (default), json, csv
--save-query NAME	Save query as a named preset

download

The main pipeline: fetch metadata, download audio, optionally convert. Supports resume -- interrupted downloads can be continued by re-running the same command.

# Basic download
xc-dl download 'grp:birds cnt:"South Africa"'

# Metadata only (no audio download)
xc-dl download 'grp:birds cnt:"South Africa"' --metadata-only

# With conversion to 16kHz mono WAV
xc-dl download 'grp:birds' --convert wav --convert-sample-rate 16000

# From a saved preset
xc-dl download --from-config south_africa_birds

# Random 10% sample (deterministic based on query hash)
xc-dl download 'grp:birds' --portion 10

# Stop after 500GB downloaded
xc-dl download 'grp:birds' --max-storage 500GB

Option	Default	Description
--metadata-only	off	Fetch metadata only
--per-page	500	Records per API page
--convert		Convert format: wav, flac, ogg
--convert-sample-rate	16000	Target sample rate (Hz)
--convert-channels	1	Target channels (1=mono)
--convert-bit-depth	16	Bit depth (16 or 32)
--skip-existing/--no-skip-existing	on	Skip already-verified files
--retry-failed/--no-retry-failed	on	Retry previously failed files
--max-retries	3	Max download retry attempts
--portion		Download a random portion (0-100%)
--max-storage		Stop after this much data (e.g. 500GB, 1TiB)
--from-config NAME		Use a named query preset
--from-file-list PATH		Download from HPC file list
--generate-file-lists	off	Create per-node file lists
--num-nodes	1	Number of HPC nodes

Pipeline Architecture

Downloads, conversions, and verification run concurrently through an asyncio.Queue-based pipeline:

Metadata Fetch ──> Download Queue ──> Convert Queue
                   (N workers)        (N/2 workers)

• Downloads start as metadata becomes available
• Conversions begin as soon as each file finishes downloading
• Ctrl+C triggers graceful shutdown: in-progress items complete, state is saved
• Re-running the same command resumes from where it stopped

Dataset Config

Each download writes a download-config.yaml to the dataset directory recording the query, parameters, and xc-dl version (never the API key). This makes datasets reproducible.

check

Verify integrity of an existing dataset via SHA-256 checksums and optional deep audio decoding.

xc-dl check --all
xc-dl check --all --deep         # Full decode (slower, catches bitstream corruption)
xc-dl check --all --fix           # Re-download corrupted/missing files
xc-dl check --all --report status.json

Option	Description
--all	Check all recordings
--query	Check only recordings matching query
--deep	Full audio decode to detect corruption
--fix	Re-download files that fail verification
--report PATH	Write JSON report to file

Dataset Structure

xc-dataset/
  catalog.jsonl                                     # Central catalog (one JSON per line)
  download-config.yaml                              # Query and parameters used
  dataset_manifest_south-africa-birds_v1.txt        # Selector file (view over catalog)
  metadata/
    Strigidae/Tyto/Tyto_alba/
      XC00694038_Tyto_alba.json                     # Sidecar metadata (raw API + xc-dl state)
  original_recordings/
    Strigidae/Tyto/Tyto_alba/
      XC00694038_Tyto_alba.mp3                      # Original audio
  resampled_16khz/
    Strigidae/Tyto/Tyto_alba/
      XC00694038_Tyto_alba.wav                      # Converted audio
  .progress/
    metadata-fetch.json                             # Resume state for metadata
    download-state.json                             # Resume state for downloads

Files are organized by Family/Genus/Genus_species/ and named with zero-padded XC IDs (XC00694038).

HPC / Distributed Workflows

For large-scale downloads across multiple nodes (e.g. on a Slurm cluster):

# 1. Fetch metadata on the login node
xc-dl download 'grp:birds' --metadata-only

# 2. Generate per-node file lists
xc-dl download --generate-file-lists --num-nodes 16

# 3. Submit array job (each node downloads its portion)
# In your Slurm script:
xc-dl download --from-file-list file-lists/node-${SLURM_ARRAY_TASK_ID}.txt

File lists are written to xc-dataset/file-lists/:

• full-list.txt -- all recording IDs
• node-0.txt through node-N.txt -- per-node chunks

Planned Features

The following features are planned but not yet implemented:

Sonogram Download Support

--include-sonograms and --sonogram-size flags will download sonogram images to a sonogram_<size>/ parallel directory tree.

update-taxonomy Subcommand

Auto-download IOC World Bird List CSV to refresh the genus-to-family mapping cache. Perhaps we could also auto update this based on metadata we pull from Xeno-canto, when a new species with genus/family is discovered update the update the taxonomy.

CSV Output for Search

--format csv option for machine-readable search output.

Interactive Fuzzy Search TUI

xc-dl search --interactive using prompt_toolkit for live query building with auto-complete and preview counts.

Dataset or query visualisation

pip install xc-dl[viz] downloads the visualisation packages (eg. datashaders) that allows the plotting of a map from where all the recordings in a dataset comes from. With perhaps someother figures like, nested pie chart for class composition or a dentogram for call type visualisation.

Disclaimer

• Code authored by Claude Opus 4.6, fully reviewed by a human
• Banner generated using Gemini Imagen 3
• This project is not officially associated with Xeno-canto
• The authors are not responsible for misuse of this project
• Users must respect the licenses under which original data contributors provided their recordings
• For large downloads, please inform the Xeno-canto team and respect their rate limits
• Special thanks to the Xeno-canto project for hosting the data and to all contributors who further bioacoustic research