xim-reader-rs 0.0.2

Parse the XIM image format from Varian

xim_reader

This tool is a python extension library to read the XIM image format, written in Rust for improved speed. I haven't had a chance to test this with many images, yet, so this library is in an alpha state. This is basically just a parsing library at the moment, so it is better used as a reader to something like the XIM class in pylinac.

Installation

If just using pip,

pip install xim-reader-rs

I recommend uv as a python projection manager, where

uv add xim-reader-rs

will work.

Usage

from xim_reader import XIMImage
import numpy as np

path = "/path/to/image.xim"
xim = XIMImage(path)

#Items parsed from header
header = xim.header
print(header.identifier)
print(header.version)
print(header.width)
print(header.height)
print(header.bits_per_pixel)
print(header.bytes_per_pixel)

#A 2D numpy array read-only view with the shape (header.height, header.width) representing the image
pixels: np.ndarray[np.int8] | np.ndarray[np.int16] | np.ndarray[np.int32] | np.ndarray[np.int64] = xim.numpy

#A list where each index represents a bin of an XIM Histogram
histogram: list[int] = xim.histogram

#Properties contained in XIM image. No processing done on these aside from reading them into a dictionary.
properties: dict[str | int | float | list[float] | list[str]] = xim.properties

Building from source

Aside from needing uv, the rust compiler must be installed an availible on PATH. I have decided to use the 2024 rust edition, meaning at the moment, only the latest rustc version(1.85) is supported. Future versions should compile the package, though. After that, running

uv build

would build the package.

To install the Rust package into the environment with a debug build, run. Refer to the maturin documentation for more info.

maturin develop

Contributing

Feel free to contribute and improve this. Testing this with different data types and compression images would be helpful as well. I currently have only tested with a 32 bit compressed image.