PPI-XL Ranking Tool
Project description
XLRanker
XLRanker is a tool to rank and prioritize protein to protein cross linking data. The tool uses parsimonious selection as well as an XGBoost model to select the best protein pairs to represent ambiguous peptides.
Installation
You can install xlranker using pip:
pip install xlranker
Usage
To analyze a TSV file containing a network of peptide sequences run:
xlranker start peptide_network.tsv
Please view the documentation for detailed usage instructions and examples.
Example Notebook
For a quick start, you can check out the example notebook in the notebooks directory or launch a google colab notebook to see how to use the package interactively.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file xlranker-0.1.0.tar.gz.
File metadata
- Download URL: xlranker-0.1.0.tar.gz
- Upload date:
- Size: 23.8 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: uv/0.7.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
f6ec28010ad029357e0fdad6528bce02c4d094894b8297931e459e8bd2567c28
|
|
| MD5 |
0b58ab381ec2dc2312dec2e9eb60520f
|
|
| BLAKE2b-256 |
fa9769a01da9420d818e046b7067b06cecbe783c0a4e450c83e1f41781e5896d
|
File details
Details for the file xlranker-0.1.0-py3-none-any.whl.
File metadata
- Download URL: xlranker-0.1.0-py3-none-any.whl
- Upload date:
- Size: 10.6 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: uv/0.7.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
3cfd1cfc340d519ba726d3693d227e098199b0ea52fb17f1ab9e6f3fdf79e2dc
|
|
| MD5 |
cda10955f5e0f8bc4fb96b3a89f1c3a2
|
|
| BLAKE2b-256 |
0204e7618cd46de6b6e42c119232d8923d614cfe6f96db8b15a1994334ed7611
|
