YAREA

Yet Another Radiomic Extraction and Analysis pipeline

A package to extract radiomic features from DICOM CT images.

Installation

$ pip install yarea

(recommended) Create new conda virtual environment

conda create -n yarea python=3.9
conda activate yarea
pip install yarea

Usage

yarea is a tool to perform radiomic feature extraction on DICOM CT images with region of interest (ROI) segmentations as either DICOM SEG or RTSTRUCT.

$ yarea [INPUT DIRECTORY] [OUTPUT DIRECTORY] \
  --roi_names [str] \
  --pyradiomics_setting [str] \
  --negative_controls [str: randomized_full,randomized_roi,randomized_non_roi,shuffled_full,shuffled_roi,shuffled_non_roi] \
  --parallel [flag]
  --update [flag]

Contributing

Interested in contributing? Check out the contributing guidelines. Please note that this project is released with a Code of Conduct. By contributing to this project, you agree to abide by its terms.

License

yarea was created by Katy Scott. It is licensed under the terms of the MIT license.

Credits

yarea was created with cookiecutter and the py-pkgs-cookiecutter template.