ykutil 0.0.7

A continuously updates repository of utility functions.

A vast range of python utils

This continuously updates with more utils that I add.

Installation

• pip install ykutil
• Or clone this repo and pip install -e .

Overview of all implemented utilities

Here is an overview of what utilities are implemented at this point.

Basic python tools

List Utilities

• list_rindex(li, x): Find the last index of x in li.
• list_split(li, max_len, min_len=None): Split li into sublists of length max_len.
• split_multi(lists, max_len, progress=False, min_len=None): Split multiple lists into sublists.
• list_multiply(elem_list, mul_list): Multiply elements of elem_list by corresponding elements in mul_list.
• list_squeeze(l): Recursively squeeze single-element lists.
• list_flip(lst): Flip list values based on max and min values.
• chunk_list(lst, n): Yield consecutive chunks of size n from lst.
• flatten(li): Flatten a list of lists.
• unique_n_times(lst, n, invalid_filter=set(), verbose=False, comboer=None, shuffle=False): Get indices of the first n occurrences of each unique element in lst.
• make_list_unique(seq): Remove duplicates from list.
• all_sublist_matches(lst, sublst): Find all sublist matches.
• removesuffixes(lst, suffix): Remove suffixes from a list.
• approx_list_split(lst, n_splits): Split a list in n_splits parts of about equal length.

String Utilities

• multify_text(text, roles): Format text with multiple roles.
• naive_regex_escape(some_str): Escape regex metacharacters in a string.
• str_find_all(string, sub): Find all occurrences of sub in string.
• re_line_matches(string, regex): Find line matches for a regex pattern.

Dictionary Utilities

• transpose_li_of_dict(lidic): Transpose a list of dictionaries.
• transpose_dict_of_li(d): Transpose a dictionary of lists.
• dict_percentages(d): Convert dictionary values to percentages.
• recursed_dict_percentages(d): Recursively convert dictionary values to percentages.
• recursed_merge_percent_stats(lst, weights=None): Merge percentage statistics recursively.
• recursed_sum_up_stats(lst): Sum up statistics recursively.
• dict_without(d, without): Return a dictionary without specified keys.

General Utilities

• identity(x): Return x.
• index_of_sublist_match(haystack, needle): Find the index of a sublist match.
• nth_index(lst, value, n): Find the nth occurrence of a value in a list.
• update_running_avg(old_avg, old_weight, new_avg, new_weight=1): Update a running average.
• all_equal(iterable, force_value=None): Check if all elements in an iterable are equal.
• approx_number_split(n, n_splits): Split a number into a list of close integers that sum ut to the number.
• anyin(haystack, needles): Predicate to check if any element from needles is in haystack

Huggingface datasets utilities

Dataset Description

• describe_dataset(ds, tokenizer=None, show_rows=(0, 3)): Print metadata, columns, number of rows, and example rows of a dataset.

Dataset Visualization

• colorcode_dataset(dd, tk, num_start=5, num_end=6, data_key="train", fname=None, beautify=True): Color-code and print dataset entries with optional beautification.
• colorcode_entry(token_ds_path, fname=None, tokenizer_path="mistralai/Mistral-7B-v0.1", num_start=0, num_end=1, beautify=True): Load a dataset from disk and color-code its entries.

Huggingface transformers utilities

Tokenization

• batch_tokenization(tk, texts, batch_size, include_offsets=False, **tk_args): Tokenize large batches of texts.
• tokenize_instances(tokenizer, instances): Tokenize a sequence of instances.
• flat_encode(tokenizer, inputs, add_special_tokens=False): Flatten and encode inputs.
• get_token_begins(encoding): Get the beginning positions of tokens.
• tokenize(tk_name, text): Tokenize a text using a specified tokenizer.
• untokenize(tk_name, tokens): Decode tokens using a specified tokenizer.

Generation

• generate_different_sequences(model, context, sequence_bias_add, sequence_bias_decay, generation_args, num_generations): Generate different sequences with bias adjustments.
• TokenStoppingCriteria(delimiter_token): Stopping criteria based on a delimiter token.

Offsets and Spans

• obtain_offsets(be, str_lengths=None): Obtain offsets from a batch encoding.
• transform_with_offsets(offsets, spans, include_left=True, include_right=True): Transform spans using offsets.
• regex_tokens_using_offsets(offsets, text, regex, include_left=True, include_right=True): Find tokens matching a regex using offsets.

Tokenizer Utilities

• find_tokens_with_str(tokenizer, string): Find tokens containing a specific string.
• load_tk_with_pad_tk(model_path): Load a tokenizer and set the pad token if not set.

Data Collation

• DataCollatorWithPadding: A data collator that pads sequences to the same length.

Chat Template

• dict_from_chat_template(chat_template_str, tk_type="llama3"): Convert a chat template string to a dictionary.

Training and Evaluation

• train_eval_and_get_metrics(trainer, checkpoint=None): Train a model, evaluate it, and return the metrics.

Model Utilities

• print_trainable_parameters(model_args, model): Print the number of trainable parameters in the model.
• print_parameters_by_dtype(model): Print the number of parameters by data type.
• smart_tokenizer_and_embedding_resize(special_tokens_dict, tokenizer, model): Resize tokenizer and embedding.
• find_all_linear_names(model, bits=32): Find all linear layer names in the model.

Torch utilities

Tensor Operations

• rolling_window(a, size): Create a rolling window view of the input tensor.
• find_all_subarray_poses(arr, subarr, end=False, roll_window=None): Find all positions of a subarray within an array.
• tensor_in(needles, haystack): Check if elements of one tensor are in another tensor.
• pad_along_dimension(tensors, dim, pad_value=0): Pad a list of tensors along a specified dimension.

Model Utilities

• disable_gradients(model): Disable gradients for all parameters in a model.

Memory Management

• print_memory_info(): Print CUDA memory information.
• free_cuda_memory(): Free CUDA memory by collecting garbage and emptying the cache.

Device Management

• get_max_memory_and_device_map(max_memory_mb): Get the maximum memory and device map for distributed settings.

Transformer Heads Utilities

Sequence Log Probability

• compute_seq_log_probability(model, pre_seq_tokens, post_seq_tokens): Compute the log probability of a sequence given a model and token sequences.

LLM API Utilities

Image Utilities

• local_image_to_data_url(image_path): Encode a local image into a data URL.

Message Utilities

• human_readable_parse(messages): Parse messages into a human-readable format.

Model Wrappers

• ModelWrapper: A wrapper class for models to handle completions and structured completions.
• AzureModelWrapper: A specialized wrapper for Azure OpenAI models with cost computation.

Executable

Bulk Rename

• do_bulk_rename(): Execute bulk renaming of files.

JSON Beautification

• beautify_json(json_str): Beautify a JSON string.
• do_beautify_json(): Command-line interface for beautifying a JSON string.

Dataset Description

• describe_dataset(ds_name, tokenizer_name=None, show_rows=(0, 3)): Describe a dataset with optional tokenization.
• do_describe_dataset(): Command-line interface for describing a dataset.

Tokenization

• tokenize(tk, text): Tokenize a text using a specified tokenizer.
• do_tokenize(): Command-line interface for tokenizing a text.

Untokenization

• untokenize(tk, tokens): Decode tokens using a specified tokenizer.
• do_untokenize(): Command-line interface for untokenizing tokens.

Dataset Color Coding

• colorcode_entry(token_ds_path, fname=None, tokenizer_path="mistralai/Mistral-7B-v0.1", num_start=0, num_end=1, beautify=True): Load a dataset from disk and color-code its entries.
• do_colorcode_dataset(): Command-line interface for color-coding a dataset.

Python Data Modelling Utilities

• summed_stat_dc(datas, avg_keys=(), weight_attr="num_examples"): Summarize statistics from a list of dataclass instances.
• undefaultdict(d, do_copy=False): Convert defaultdict to dict recursively.
• stringify_tuple_keys(d): Convert tuple keys in a dictionary to strings.
• Serializable: A base class to make dataclasses JSON serializable and hashable.
• sortedtuple(sort_fun, fixed_len=None): Create a sorted tuple type with a custom sorting function.

Statistics tools

• Statlogger: A class for logging and updating statistics.
• Welfords: A class for Welford's online algorithm for computing mean and variance.

Pretty print tools

Object description

• describe_recursive(l, types, lengths, arrays, dict_keys, depth=0): Recursively describe the structure of a list or tuple.
• describe_list(l, no_empty=True): Describe the structure of a list or tuple.
• describe_array(arr): Describe the properties of a numpy array or torch tensor.

Logging Utilities

• add_file_handler(file_path): Add a file handler to the logger.
• log(*messages, level=logging.INFO): Log messages with a specified logging level.

Miscellaneous

PEFT Utilities

• load_maybe_peft_model_tokenizer(model_path, device_map="auto", quantization_config=None, flash_attn="flash_attention_2", only_inference=True): Load a PEFT model and tokenizer, with optional quantization and flash attention.

Pandera Utilities

• empty_dataframe_from_model(Model): Create an empty DataFrame from a Pandera DataFrameModel.

Multiprocessing Utilities

• starmap_with_kwargs(pool, fn, args_iter, kwargs_iter): Apply a function to arguments and keyword arguments in parallel using a pool.
• apply_args_and_kwargs(fn, args, kwargs): Apply a function to arguments and keyword arguments.
• run_in_parallel(func, list_ordered_kwargs, num_workers, extra_kwargs={}): Run a function in parallel with specified arguments and number of workers.

Constants

• IGNORE_INDEX: Constant for ignore index.
• DEFAULT_PAD_TOKEN: Default padding token.
• SPACE_TOKENIZERS: Tuple of space tokenizers.

Configuration Utilities

• from_file(cls, config_file, **argmod): Load a configuration from a file and apply modifications.

Accelerate Tools

• gather_dict(d, strict=False): Gather a dictionary across multiple processes.

Types Utilities

• describe_type(o): Pretty print the type of an object
• T and U: TypeVars ready to use