Efficient algorithms for exact and approximate enumeration of admixed arrays
Admixed arrays are discrete structures arising from analyses of genetically admixed populations, and are closely related to binary matrices. zagar is a software that allows the user to compute the cardinality of constrained sets of admixed arrays. These constraints include individual global ancestry proportions (a row sum constraint) and ancestry-specific allele frequencies (a column sum constraint). Analytically derived approximate counts are provided for semi-regular constraints.
Project Website
Installation instructions, tutorials and API documentation can be found here:
https://alanaw1.github.io/zagar
License
Our software carries a GPL-3.0 license.
Our project website carries a CC BY 4.0 license.
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