Convert scientific image formats (TIFF, MRC, N5) to OME-Zarr
Project description
zarrify
Convert TIFF, MRC, and N5 files to OME-Zarr format.
Install
pip install zarrify
Usage
zarrify --src input.tiff --dest output.zarr --cluster local
Python API
import zarrify
from zarrify.utils.dask_utils import initialize_dask_client
client = initialize_dask_client("local")
zarrify.to_zarr("input.tiff", "output.zarr", client)
Supported formats
- TIFF stacks
- 3D TIFF files
- MRC files
- N5 containers
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