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Find hydrated waters in atomic-resolution crystal structures

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Zeigen implements a query of the PDB, with download of metadata. The query is highly configurable through the zeigen.conf configuration file that is placed in a system-dependent config directory upon first program run. The query results are placed in a TSV file, with global stats to a JSON file.


  • Tested on Python 3.9 and 3.10 on Linux and Mac


You can install Zeigen via pip from PyPI:

$ pip install zeigen


Please see the Command-line Reference for details.


Contributions are very welcome. To learn more, see the Contributor Guide.


Distributed under the terms of the BSD 3-Clause license, Zeigen is free and open source software.


If you encounter any problems, please file an issue along with a detailed description.


Zeigen was written by Joel Berendzen.

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