CytoPix is a graphical user interface for manually segmenting deformability cytometry (DC) images. The mask data (labeled images) can be used for training machine-learning based segmentation algorithms and are also generally useful for benchmarking segmentation algorithms.
Documentation
The documentation is available at cytopix.readthedocs.io.
Installation
Installers for Windows and macOS are available at the release page.
If you have Python installed, you can install CytoPix from PyPI
# graphical user interface pip install cytopix
Execution
If you have installed CytoPix from PyPI, you can start it with
cytopix # or python -m cytopix
Citing CytoPix
Please cite CytoPix either in-line
(...) using the pixel-based segmentation software CytoPix version X.X.X (available at https://github.com/DC-analysis/CytoPix).
or in a bibliography
Paul Müller and others (2025), CytoPix version X.X.X: Pixel-based manual segmentation of deformability cytometry images [Software]. Available at https://github.com/DC-analysis/CytoPix.
and replace X.X.X with the version of CytoPix that you used.
Testing
pip install -e . pip install -r tests/requirements.txt pytest tests
2 maintainers
Metadata
2 maintainers
Release files for cytopix 0.2.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| cytopix-0.2.2.tar.gz | 551.6 kB | Without provenance | Details for cytopix-0.2.2.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| cytopix-0.2.2-py3-none-any.whl | Python 3 | none | any | Details for cytopix-0.2.2-py3-none-any.whl |
Total release size: 585.4 kB
Release files / cytopix-0.2.2.tar.gz
| Download URL | cytopix-0.2.2.tar.gz |
|---|---|
| Size | 551.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
831218f4d012a468bab558cc02417431c93597ef7893812d6dce8959ce08559e
|
|
BLAKE2b-256 checksum How to use checksums |
1cd03f43639d4eb69b4167a4657e2933f7a3f73dcbda98e65f0cad44d7294412
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.12.3
|
Release files / cytopix-0.2.2-py3-none-any.whl
| Download URL | cytopix-0.2.2-py3-none-any.whl |
|---|---|
| Size | 33.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
b8372f8c38e7602067a7e4a02612b6f6d9b93488e5c5eb5b4f4012e56f15d924
|
|
BLAKE2b-256 checksum How to use checksums |
73926687d321a860fff427e906a8811d02835c8925551b4ae4cd6373123ece01
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.12.3
|
Security for cytopix 0.2.2
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
