Overview
This project is about detecting modifications of DNA in PacBio sequencing data stored in the BAM format. The PacBio sequencing data is processed at molecule level: each molecule/ZMW/hole number is analyzed individually.
To learn how to start using this software, have a look at the quickstart section.
Or check the usage section, for more details.
Free software: GNU General Public License v3
Documentation: https://pacbio-data-processing.readthedocs.io
Gitlab repository: https://gitlab.com/dvelazquez/pacbio-data-processing
Features
Detection of individual m6A modifications in each molecule.
The single molecule analysis of a BAM file can be performed with a command line interface (CLI) program sm-analysis or using a simple graphical user interface (GUI) program, sm-analysis-gui.
The single molecule analysis can be parallelized to speed up the processing of large BAM files.
An auxiliary executable, bam-filter, is also provided.
Credits
This package was created with Cookiecutter and the palao/cookiecutter-genrepo-pypackage project template.
1 maintainer
Metadata
1 maintainer
Release files for PacbioDataProcessing 1.3.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| PacbioDataProcessing-1.3.0.tar.gz | 25.0 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pacbiodataprocessing-1.3.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 25.1 MB
Release files / PacbioDataProcessing-1.3.0.tar.gz
| Download URL | PacbioDataProcessing-1.3.0.tar.gz |
|---|---|
| Size | 25.0 MB |
| Tags | Source |
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Release files / pacbiodataprocessing-1.3.0-py3-none-any.whl
| Download URL | pacbiodataprocessing-1.3.0-py3-none-any.whl |
|---|---|
| Size | 90.5 kB |
| Tags | Python 3 |
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No |
| Uploaded via |
python-requests/2.26.0
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