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django-galaxy

Django interfacing with Galaxy. Backend using the bioblend API.

Galaxy is a web based workflow platform that can be used to perform bioinformatics in a reproducible and sharable environment.

Further documentation available on ReadTheDocs

Quick start

Add “galaxy” and django application dependencies to your INSTALLED_APPS setting like this (galaxy should come before gfiles):

INSTALLED_APPS = [
    ...
    'galaxy',
    'gfiles',


    'django_tables2',
    'bootstrap3',
    'django_tables2_column_shifter',
    'django_sb_admin',
    'django_filter'
]

Include the polls URLconf in your project urls.py like this:

url(r'^', include('gfiles.urls')),
url('galaxy/', include('galaxy.urls')),

Run python manage.py migrate to create the models.
Start the development server and visit http://127.0.0.1:8000
Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/
View summary of Galaxy instances and options http://127.0.0.1:8000/galaxy/galaxy_summary/
Register Galaxy instance http://127.0.0.1:8000/galaxy/addgi/
Register Galaxy user http://127.0.0.1:8000/galaxy/addguser/
Upload file(s) to Django (for bulk upload of files see django-misa and django-mogi) http://127.0.0.1:8000/upload_gfile/
Upload file(s) to Galaxy data library (for bulk upload of files see django-misa and django-mogi) http://127.0.0.1:8000/galaxy/files_to_galaxy_datalib/
Run workflow (for running workflows with ISA data see django-misa and django-mogi) http://127.0.0.1:8000/galaxy/workflow_summary/
View histories http://127.0.0.1:8000/galaxy/history_status/

Metadata

Release files for django-galaxy 0.0.2

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for django-galaxy 0.0.2
File	Size	Uploaded
django-galaxy-0.0.2.tar.gz	43.6 kB	Jul 30, 2019	Details

Built distribution (wheel)

Table of built distributions (wheels) for django-galaxy 0.0.2
File	Interpreter	ABI	Platform	Reset
django_galaxy-0.0.2-py3-none-any.whl 59.0 kB Jul 30, 2019	Python 3	none	any	Details

Total release size: 102.6 kB

Release files / django-galaxy-0.0.2.tar.gz

Download URL	django-galaxy-0.0.2.tar.gz
Size	43.6 kB
Tags	Source
SHA-256 checksum How to use checksums	`cb1ecd0688f452f50f243f4e1d76dfaebd6e50fb65d11f01d510b4cb03c77095`
BLAKE2b-256 checksum How to use checksums	`1b0ba7b88cba4955a3120c739981c0e78b86f91ccb4bb02efb5453345d7ce83d`
Upload date	Jul 30, 2019
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.3`

Release files / django_galaxy-0.0.2-py3-none-any.whl

Download URL	django_galaxy-0.0.2-py3-none-any.whl
Size	59.0 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`92d7c1a9514fda8051ec16901a3f2c69ae7ac3b183d877dd3bc90ce0b7ce8ca8`
BLAKE2b-256 checksum How to use checksums	`349af3df81934db07608bf93628cc3a6f0ffa628189e6c04294729b5790cdf3a`
Upload date	Jul 30, 2019
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.3`