dN/dS Calculator
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method. Also calculates the pN/pS ratio precisely (previously referred to as dN/dS).
Usage
>>> sequence_1 = "ATGCTTTTGAAATCG"
>>> sequence_2 = "ATGCGTTCGAAGTCG"
>>> pnps(sequence_1, sequence2)
Fraction(38, 71)
>>> round(float(pnps(sequence_1, sequence2)), 3)
0.535
>>> round(dnds(sequence_1, sequence_2), 3)
0.4671 maintainer
Metadata
1 maintainer
Release files for dnds 2.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| dnds-2.1-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Release files / dnds-2.1-py2.py3-none-any.whl
| Download URL | dnds-2.1-py2.py3-none-any.whl |
|---|---|
| Size | 3.7 kB |
| Tags | Python 2 Python 3 |
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