libnano: Low-level nucleic acid sequence manipulation tools
libnano is beta
nucleic acid toolkit
Features
seqstr: Reverse Complement and Hamming Distance finders
seqgraph: find cliques of compatible sequences
seqint: convert sequences less than 32 bases to binary
seqscreen: filter sequences based on things like GC content
ensemblrest: Use the Ensembl REST API to look up gene and transcript information
prostr: work with converting DNA to RNA to AA and back again
barcode_tools: generate DNA barcode sets with length and Hamming distance restrictions
seqsearch: search sequences for features like restriction sites or “submers” (kmers with 0 or more mismatches to a subsequence in the target)
fileio: genbank and fasta reader/writers, xmfa
seqrecord: less featured replacement for Biopython SeqRecord
Installation
If you would like to install libnano in your local Python environment you may use pip:
$ pip install libnano
or build from source from Github repo
$ python setup.py install
Release files for libnano 0.2.3.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| libnano-0.2.3.0.tar.gz | 1.7 MB | Without provenance | Details for libnano-0.2.3.0.tar.gz |
Built distributions (wheels)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| libnano-0.2.3.0-cp36-cp36m-win_amd64.whl | CPython 3.6 | CPython 3.6 pymalloc | Windows x86-64 | Details for libnano-0.2.3.0-cp36-cp36m-win_amd64.whl |
| libnano-0.2.3.0-cp36-cp36m-macosx_10_10_x86_64.whl | CPython 3.6 | CPython 3.6 pymalloc | macOS 10.10+ x86-64 | Details for libnano-0.2.3.0-cp36-cp36m-macosx_10_10_x86_64.whl |
Total release size: 3.5 MB
Release files / libnano-0.2.3.0.tar.gz
| Download URL | libnano-0.2.3.0.tar.gz |
|---|---|
| Size | 1.7 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / libnano-0.2.3.0-cp36-cp36m-win_amd64.whl
| Download URL | libnano-0.2.3.0-cp36-cp36m-win_amd64.whl |
|---|---|
| Size | 873.8 kB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Windows x86-64 |
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SHA-256 checksum How to use checksums |
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Release files / libnano-0.2.3.0-cp36-cp36m-macosx_10_10_x86_64.whl
| Download URL | libnano-0.2.3.0-cp36-cp36m-macosx_10_10_x86_64.whl |
|---|---|
| Size | 874.6 kB |
| Tags | CPython 3.6 CPython 3.6 pymalloc macOS 10.10+ x86-64 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/1.9.1 pkginfo/1.4.1 requests/2.18.2 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.15.0 CPython/3.6.1
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Security for libnano 0.2.3.0
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