4 projects
molcompose-mcp
Agent-safe MCP server exposing MolCompose figure commands in UCSF ChimeraX
foldmetrics
Unified confidence metrics (pTM, ipTM, pLDDT, ipLDDT, PAE, ipSAE, pDockQ, pDockQ2, LIS, DockQ) and interface contacts for AlphaFold2/3, ColabFold, Boltz, Chai-1, Protenix, OpenDDE, HelixFold3 and SeedFold predictions
foldrunner
Enumerate all-vs-all protein pairs, compute each MSA once, and generate native inputs for AlphaFold 3, AlphaFold Server, Boltz-2, Protenix, Chai-1, ColabFold, AlphaFold2-Multimer and SeedFold
homoppi
Homology-based protein-protein interaction prediction via interolog mapping and domain-domain interactions
