14 projects
sparkit-science
Python SDK for the SPARKIT scientific research API
orthohmm
HMM-based orthogroups
selkit
Python reimplementation of PAML's selection-analysis workflows (codeml, yn00).
jlsteenwyk-biokit
None
clustkit
Accurate protein sequence clustering via LSH, Smith-Waterman alignment, and Leiden community detection
phykit
None
gokit
Command-line toolkit for GO enrichment analysis
clipkit
Alignment trimming software for phylogenetics.
treeml
Phylogenetic machine learning: scikit-learn estimators that account for evolutionary non-independence
pypubfigs
Colorblind-friendly color palettes and themes for publication-quality scientific figures using matplotlib and seaborn.
gh-skyline-python
Python MVP for generating GitHub Skyline STL models
orthosnap
orthosnap, identify orthologous subgroups of genes in large orthologous groups of genes.
orthofisher
orthofisher
ecomp
Lossless evolutionary-aware multiple sequence alignment compressor
