Lon

terra-notebook-utils

Last released Aug 26, 2026

Utilities for the Terra notebook environment.

toil

Last released Jun 3, 2026

Pipeline management software for clusters.

braingeneers

Last released May 14, 2026

Braingeneers Python utilities

bgzip

Last released Nov 11, 2025

Utilities working with blocked gzip streams.

toil-batch-system-tes

Last released Jul 1, 2024

A TES batch system plugin for Toil

getm

Last released May 24, 2023

Download data from URLs quickly, with integrity

xsamtools

Last released Jun 2, 2022

Lightly modified versions of samtools, htslib, and bcftools.

bog

Last released Feb 28, 2022

A visceral exploration of utility functions.

tak

Last released Feb 26, 2022

Tak is a two person board game dreamed up by Pat Rothfuss in "The Wise Man's Fear".

hoe

Last released Feb 26, 2022

They're good for you.

oat

Last released Feb 26, 2022

They're good for you.

terra-pandas

Last released Feb 10, 2021

Tools work with Terra data tables in Pandas

herzog

Last released Dec 3, 2020

Generate Jupyter notebooks.

gs-chunked-io

Last released Oct 21, 2020

Streaming read/writes to Google Storage blobs with ascynchronous buffering.

toil-rnaseq

Last released Aug 17, 2020

UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq workflow

toil-lib

Last released May 10, 2017

A common library for functions and tools used in toil-based pipelines

toil-scripts

Last released Dec 2, 2016

A repository of genomic workflows developed by the UCSC Computational Genomics lab