11 projects
toil
Pipeline management software for clusters.
terra-notebook-utils
Utilities for the Terra notebook environment.
getm
Download data from URLs quickly, with integrity
xsamtools
Lightly modified versions of samtools, htslib, and bcftools.
bgzip
Utilities working with blocked gzip streams.
terra-pandas
Tools work with Terra data tables in Pandas
herzog
Generate Jupyter notebooks.
gs-chunked-io
Streaming read/writes to Google Storage blobs with ascynchronous buffering.
toil-rnaseq
UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq workflow
toil-lib
A common library for functions and tools used in toil-based pipelines
toil-scripts
A repository of genomic workflows developed by the UCSC Computational Genomics lab