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Pipeline management software for clusters.

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Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming. It supports running workflows written in either Common Workflow Language (CWL) 1.0-1.2 or Workflow Description Language (WDL) 1.0-1.1, as well as having its own rich Python API for writing workflows against. It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud.

  • Check the website for a description of Toil and its features.

  • Full documentation for the latest stable release can be found at Read the Docs.

  • Please subscribe to low-volume announce mailing list so we keep you informed

  • Google Groups discussion forum

  • See our occasional blog for tutorials.

  • Use biostars channel for discussion.


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