toil 7.0.0

Pipeline management software for clusters.

Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming. It supports running workflows written in either Common Workflow Language (CWL) 1.0-1.2 or Workflow Description Language (WDL) 1.0-1.1, as well as having its own rich Python API for writing workflows against. It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud.

• Check the website for a description of Toil and its features.

• Full documentation for the latest stable release can be found at Read the Docs.

• Please subscribe to low-volume announce mailing list so we keep you informed

• Google Groups discussion forum

• See our occasional blog for tutorials.

• Use biostars channel for discussion.

Notes:

• Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.

• Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).