9 projects
phenometer
Single-cell phenotype scores from microscopy images. Placeholder release; in development.
histometer
Name reserved for a project that has not been released yet.
nellie
Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
pipeco
An easy-to-use pipeline builder.
sesamum
A lightweight bioformats-like library for Python
count-label-changes
A plugin for Nellie that counts label changes. One type of typically used fission and fusion metric.
my-nellie-plugin
A plugin for Nellie that does XYZ
snouty-viewer
A plugin to visualize, deskew, and combine Snouty data.
histo-tools
General histology tools.
