A lightweight bioformats-like library for Python
Project description
Sesamum
A lightweight bioformats-like library for Python.
Description
Sesamum provides a simple, unified interface for reading various microscopy image formats (TIFF, LSM, ND2) into NumPy arrays, along with their metadata. It aims to be minimal and lightweight, avoiding heavy dependencies.
Installation
pip install sesamum
Usage
import sesamum
# Read a file (format detected automatically)
data, metadata = sesamum.read('path/to/image.tif')
print(f"Shape: {data.shape}")
print(f"Metadata: {metadata}")
Supported Formats
- TIFF (
.tif,.tiff) - LSM (
.lsm) - Nikon ND2 (
.nd2)
Dependencies
numpytifffilend2
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