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Alister Burt

Username    alisterburt
Date joined   Joined

26 projects

torch-grid-utils

Last released

Grid utilities for 2D/3D image manipulations in PyTorch

torch-fourier-rescale

Last released

Rescale 2D and 3D images by Fourier padding/cropping in PyTorch

torch-fourier-shift

Last released

Shift 2D/3D images by phase shifting Fourier transforms in PyTorch

napari-tomoslice

Last released

Tomogram visualisation and annotation in napari.

starfile

Last released

Read and write STAR files as pandas DataFrames

imodmodel

Last released

IMOD model files as pandas DataFrames in Python.

torch-fourier-slice

Last released

Fourier slice extraction/insertion in PyTorch.

torch-image-lerp

Last released

Linear interpolation and gridding for 2D and 3D images in PyTorch

mdocfile

Last released

SerialEM mdoc files as pandas dataframes.

napari-threedee

Last released

A suite of useful tools based on 3D interactivity in napari

morphosamplers

Last released

A library for sampling image data along morphological objects such as splines and surfaces.

yet-another-imod-wrapper

Last released

A simple API for automated tilt-series alignment using IMOD

napari-mrcfile-reader

Last released

Read MRC2014 files in napari using mrcfile.

fidder

Last released

U-Net for 2D fiducial segmentation in cryo-EM

torch-cubic-spline-grids

Last released

Cubic spline interpolation on multidimensional grids in PyTorch

torch-cubic-b-spline-grid

Last released

Cubic B-spline interpolation on multidimensional grids in PyTorch

mdocspoofer

Last released

spoof SerialEM mdoc files from images collected in Tomography v5 from ThermoFisher

segmentation-nets-in-pytorch

Last released

A collection of neural networks for 2D and 3D image segmentation in PyTorch

tiltstack

Last released

stack tilt images into tilt-series, keeping track of metadata

napari-subboxer

Last released

A napari plugin for interacting with electron cryotomograms

mrchead

Last released

CLI tool for viewing mrc file headers

emanjson2imodxf

Last released

Convert tilt-series alignments from EMAN2 to IMOD format.

dynamo2m

Last released

Interface the cryo-EM packages warp, dynamo and M

pathlibls

Last released

Add convenience methods ls and listdir to Path objects

eulerangles

Last released

Simplify the handling of large sets of Euler angles in Python

dynamotable

Last released

Read and write table files from the Dynamo software package for subtomogram averaging as pandas dataframes

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