12 projects
wetlands
Wetlands is a lightweight library to create conda environment and execute code inside them.
bioimageflow
Python library for orchestrating bioimage analysis workflows
bioimageflow-core
Core types and tool base classes for BioImageFlow — zero dependencies
bioimageflow-common-tools
Common bioimage analysis tools for BioImageFlow
ldbg
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napari-deepfinder
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
exodeepfinder
ExoDeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
napari-exodeepfinder
A napari plugin for the ExpDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
bioimageit
A FAIR data management and image analysis framework
tirfm-deepfinder
ExoDeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
cryoet-deepfinder
DeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
em-deepfinder
Deep Finder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
