20 projects
bioimageflow-tracking-tools
Object extraction and lightweight tracking tools for BioImageFlow
bioimageflow-spot-tools
Spot detection and puncta quantification tools for BioImageFlow
bioimageflow-measurement-tools
Lightweight measurement tools for BioImageFlow
bioimageflow-common-tools
Common bioimage analysis tools for BioImageFlow
bioimageflow-segmentation-tools
Segmentation tools for BioImageFlow
bioimageflow-sairpico-tools
SAIRPICO command-line tool wrappers for BioImageFlow
bioimageflow-restoration-tools
Restoration inference and image-quality metrics for BioImageFlow
bioimageflow-io-tools
Lightweight image IO tools for BioImageFlow
bioimageflow
Python library for orchestrating bioimage analysis workflows
bioimageflow-core
Worker-safe core types and tool base classes for BioImageFlow
wetlands-launcher
Auto-updating application launcher with Python environment management
wetlands
Create isolated Pixi environments and run Python functions or managed commands without dependency conflicts.
ldbg
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napari-deepfinder
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
exodeepfinder
ExoDeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
napari-exodeepfinder
A napari plugin for the ExpDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
bioimageit
A FAIR data management and image analysis framework
tirfm-deepfinder
ExoDeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
cryoet-deepfinder
DeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
em-deepfinder
Deep Finder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
