bioimageflow-restoration-tools
Tools for restoration inference, simple image-processing comparisons, and restoration metrics.
Package discovery requires only bioimageflow-core; ImageIO, NumPy, SciPy, scikit-image, and CAREamics are supplied by the processing environments when tools execute.
Tools
CAREamicsPredict: runs CAREamics restoration inference from a checkpoint.RestorationMetrics: computes MSE, PSNR, and residual-noise measurements.TotalVariationDenoise: applies Chambolle total-variation denoising.BilateralDenoise: applies edge-preserving bilateral denoising.GaussianDenoise: applies Gaussian smoothing as a simple denoising method.MedianDenoise: removes impulse noise with a SciPy median filter.BackgroundSubtract: subtracts a smoothed background estimate.UnsharpMask: sharpens images by adding high-frequency residuals.RichardsonLucyRestoration: runs Richardson-Lucy deconvolution.
Use the low-SNR restoration workflow in the main workflow catalog for a complete restoration example.
RestoreImage was removed in favor of the dedicated TotalVariationDenoise, BilateralDenoise, GaussianDenoise, and UnsharpMask tools.
BackgroundSubtract.preserve_range was renamed to shift_to_zero because it shifts the minimum to zero rather than preserving the original range.
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Metadata
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Release files for bioimageflow-restoration-tools 0.2.2
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Source distribution (sdist)
| File | Size | Uploaded | |
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| bioimageflow_restoration_tools-0.2.2.tar.gz | 12.5 kB | Details |
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|---|---|---|---|---|
| bioimageflow_restoration_tools-0.2.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 21.4 kB
Release files / bioimageflow_restoration_tools-0.2.2.tar.gz
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