11 projects
genomad
geNomad: Identification of mobile genetic elements
pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
pyleiden
pyLeiden: a CLI tool for clustering with the Leiden algorithm
taxopy
A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers.
tspex
A Python package for calculating tissue-specificity metrics for gene expression.
magpurify2
Identify and remove contaminants from metagenome-assembled genomes.
pycoverm
checkv
Assess the quality of metagenome-assembled viral genomes.
kcounter
rnasamba
A tool for computing the coding potential of RNA transcript sequences using deep learning.
magpurify
Identify and remove incorrectly binned contigs from metagenome-assembled genomes.
