15 projects
genomad
geNomad: Identification of mobile genetic elements
local-cd-search
Protein annotation using local PSSM databases from CDD
parquet-stream-writer
Write streaming data to Parquet files with automatic sharding.
pydustmasker
Python bindings to DustMasker, a utility to identify and mask low-complexity regions in nucleotide sequences
taxopy
A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers.
pycoverm
Simple Python interface to CoverM's fast coverage estimation functions
pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
polars-pairing
Polars plugin with pairing functions for nonnegative integers
checkv
CheckV: Assessing the quality of metagenome-assembled viral genomes
pyleiden
pyLeiden: a CLI tool for clustering with the Leiden algorithm
tspex
A Python package for calculating tissue-specificity metrics for gene expression.
magpurify2
Identify and remove contaminants from metagenome-assembled genomes.
kcounter
rnasamba
A tool for computing the coding potential of RNA transcript sequences using deep learning.
magpurify
Identify and remove incorrectly binned contigs from metagenome-assembled genomes.
