57 projects
neurodamus
A BBP Simulation Control application for NEURON
bluepyefe
Blue Brain Python E-feature extraction
efel
Electrophys Feature Extract Library (eFEL)
EModelRunner
Runs cells from Blue Brain Project cell packages, such as sscx, synapse plasticity, etc.
bluepyemodel
Blue Brain Python Electrical Modeling Pipeline
blueetl
Multiple simulations analysis tool
currentscape
Module to easily plot currentscape.
connectome-manipulator
A connectome manipulation framework for SONATA circuits
atlas-placement-hints
Library containing command lines and tools to compute placement hints
functionalizer
A PySpark implementation of the Blue Brain Project Functionalizer
blue-cwl
Common Workflow Language inspired workflow definitions.
entity-management
Access to production entity management
brainbuilder
BrainBuilder is a tool to define the cells that will compose a circuit.
psp-validation
PSP analysis tools
neuroc
NeuroC: a collection of tools for morphology cloning applications
brayns
Brayns Python API
libsonata
SONATA files reader
bluepyopt
Bluebrain Python Optimisation Library (bluepyopt)
nexusforge
Building and Using Knowledge Graphs made easy.
ArchNGV
NGV architecture modules
neurom
NeuroM: a light-weight neuron morphology analysis package
brain-indexer
A spatial index implementation for spheres, morphologies and synapses
emodel-generalisation
Generalisation of neuronal electrical models with MCMC
NeuroR
A morphology repair tool
plotly-helper
Package that makes plotly easy
morph-tool
A collection of CLIs and python function related to morphology handling
vascpy
Vasculature API
TMD
A python package for the topological analysis of neurons.
atlas-densities
Library containing command lines and tools to compute volumetric cell densities in the rodent brain
NeuroTS
Synthesis of artificial neurons using their topological profiles package.
diameter-synthesis
Diametrize cells.
blueetl-core
Core transformations for BlueETL
fz-td-recipe
Read and modify parameters used in neuroscientific in silico circuit building.
dir-content-diff
Simple tool to compare directory contents.
data-validation-framework
Simple framework to create data validation workflows.
morphology-workflows
Workflows used for morphology processing.
morphio
A neuron morphology IO library
ngv-ctools
NGV Architecture c++ modules
Connectome-Utilities
Complex network representation and analysis layer
bluepymm
Model Management Python Library (bluepymm)
voxcell
Voxcell is a small library to handle probability distributions that have a spatial component and to use them to build collection of cells in space.
AstroVascPy
Simulating blood flow in vasculature
atlas-splitter
CLI to split atlas regions and modify annotations accordingly
BluePyParallel
Provides an embarrassingly parallel tool with sql backend.
sphinx-bluebrain-theme
Blue Brain Project theme for Sphinx
bluepysnap
Simulation and Neural network Analysis Productivity layer
atlas-direction-vectors
Commands to compute direction vectors in volumetric brain regions. Direction vectors are 3D unit vectors associated to voxels of a brain region. They represent the directions of the fiber tracts.
bioexplorer
Python API for the Blue Brain BioExplorer
atlas-commons
Library containing common functions to build atlases
brion
BlueBrain I/O Library
luigi-tools
Tools to work with luigi.
bluegraph
Knowledge Graphs analytics.
cgal-pybind
Python bindings for some CGAL classes
rockets
Rockets python client
basalt
Graph API powered by RocksDB persistent key-value store for fast storage
flake8-oist-steps
Check usage STEPS subcellular simulator
hpcbench
Specify and run your benchmarks
