40 projects
Connectome-Utilities
Complex network representation and analysis layer
bluepyopt
Bluebrain Python Optimisation Library (bluepyopt)
efel
Electrophys Feature Extract Library (eFEL)
brayns
Brayns Python API
neurom
NeuroM: a light-weight neuron morphology analysis package
NeuroTS
Synthesis of artificial neurons using their topological profiles package.
bluepymm
Model Management Python Library (bluepymm)
EModelRunner
Runs cells from Blue Brain Project cell packages, such as sscx, synapse plasticity, etc.
atlas-densities
Library containing command lines and tools to compute volumetric cell densities in the rodent brain
libsonata
SONATA files reader
bluepyefe
Blue Brain Python E-feature extraction
emodel-generalisation
Generalisation of neuronal electrical models with MCMC
sphinx-bluebrain-theme
Blue Brain Project theme for Sphinx
nexusforge
Building and Using Knowledge Graphs made easy.
currentscape
Module to easily plot currentscape.
data-validation-framework
Simple framework to create data validation workflows.
MorphIO
A neuron morphology IO library
bluepysnap
Simulation and Neural network Analysis Productivity layer
voxcell
Voxcell is a small library to handle probability distributions that have a spatial component and to use them to build collection of cells in space.
atlas-splitter
CLI to split atlas regions and modify annotations accordingly
morphology-workflows
Workflows used for morphology processing.
TMD
A python package for the topological analysis of neurons.
dir-content-diff
Simple tool to compare directory contents.
brion
BlueBrain I/O Library
diameter-synthesis
Diametrize cells.
bioexplorer
Python API for the Blue Brain BioExplorer
luigi-tools
Tools to work with luigi.
NeuroR
A morphology repair tool
atlas-direction-vectors
Commands to compute direction vectors in volumetric brain regions. Direction vectors are 3D unit vectors associated to voxels of a brain region. They represent the directions of the fiber tracts.
morph-tool
A collection of CLIs and python function related to morphology handling
vascpy
Vasculature API
bluegraph
Knowledge Graphs analytics.
atlas-placement-hints
Library containing command lines and tools to compute placement hints
atlas-commons
Library containing common functions to build atlases
cgal-pybind
Python bindings for some CGAL classes
plotly-helper
Package that makes plotly easy
rockets
Rockets python client
basalt
Graph API powered by RocksDB persistent key-value store for fast storage
flake8-oist-steps
Check usage STEPS subcellular simulator
hpcbench
Specify and run your benchmarks
