48 projects
efel
Electrophys Feature Extract Library (eFEL)
data-validation-framework
Simple framework to create data validation workflows.
morphology-workflows
Workflows used for morphology processing.
bluepyemodel
Blue Brain Python Electrical Modeling Pipeline
bluepyopt
Bluebrain Python Optimisation Library (bluepyopt)
fz-td-recipe
Read and modify parameters used in neuroscientific in silico circuit building.
morphio
A neuron morphology IO library
blueetl
Multiple simulations analysis tool
bluepyefe
Blue Brain Python E-feature extraction
atlas-densities
Library containing command lines and tools to compute volumetric cell densities in the rodent brain
ngv-ctools
NGV Architecture c++ modules
neurom
NeuroM: a light-weight neuron morphology analysis package
neurodamus
A BBP Simulation Control application for NEURON
Connectome-Utilities
Complex network representation and analysis layer
bluepymm
Model Management Python Library (bluepymm)
blueetl-core
Core transformations for BlueETL
dir-content-diff
Simple tool to compare directory contents.
voxcell
Voxcell is a small library to handle probability distributions that have a spatial component and to use them to build collection of cells in space.
brayns
Brayns Python API
AstroVascPy
Simulating blood flow in vasculature
atlas-splitter
CLI to split atlas regions and modify annotations accordingly
emodel-generalisation
Generalisation of neuronal electrical models with MCMC
BluePyParallel
Provides an embarrassingly parallel tool with sql backend.
TMD
A python package for the topological analysis of neurons.
sphinx-bluebrain-theme
Blue Brain Project theme for Sphinx
bluepysnap
Simulation and Neural network Analysis Productivity layer
atlas-placement-hints
Library containing command lines and tools to compute placement hints
EModelRunner
Runs cells from Blue Brain Project cell packages, such as sscx, synapse plasticity, etc.
atlas-direction-vectors
Commands to compute direction vectors in volumetric brain regions. Direction vectors are 3D unit vectors associated to voxels of a brain region. They represent the directions of the fiber tracts.
libsonata
SONATA files reader
morph-tool
A collection of CLIs and python function related to morphology handling
bioexplorer
Python API for the Blue Brain BioExplorer
NeuroTS
Synthesis of artificial neurons using their topological profiles package.
atlas-commons
Library containing common functions to build atlases
nexusforge
Building and Using Knowledge Graphs made easy.
currentscape
Module to easily plot currentscape.
brion
BlueBrain I/O Library
diameter-synthesis
Diametrize cells.
luigi-tools
Tools to work with luigi.
NeuroR
A morphology repair tool
vascpy
Vasculature API
bluegraph
Knowledge Graphs analytics.
cgal-pybind
Python bindings for some CGAL classes
plotly-helper
Package that makes plotly easy
rockets
Rockets python client
basalt
Graph API powered by RocksDB persistent key-value store for fast storage
flake8-oist-steps
Check usage STEPS subcellular simulator
hpcbench
Specify and run your benchmarks
