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33 projects

atlas-direction-vectors

Last released

Commands to compute direction vectors in volumetric brain regions. Direction vectors are 3D unit vectors associated to voxels of a brain region. They represent the directions of the fiber tracts.

voxcell

Last released

Voxcell is a small library to handle probability distributions that have a spatial component and to use them to build collection of cells in space.

neurom

Last released

NeuroM: a light-weight neuron morphology analysis package

NeuroR

Last released

A morphology repair tool

nexusforge

Last released

Building and Using Knowledge Graphs made easy.

libsonata

Last released

SONATA files reader

vascpy

Last released

Vasculature API

bluegraph

Last released

Knowledge Graphs analytics.

bioexplorer

Last released

Python API for the Blue Brain BioExplorer

sphinx-bluebrain-theme

Last released

Blue Brain Project theme for Sphinx

data-validation-framework

Last released

Simple framework to create data validation workflows.

luigi-tools

Last released

Tools to work with luigi

atlas-densities

Last released

Library containing command lines and tools to compute volumetric cell densities in the rodent brain

atlas-placement-hints

Last released

Library containing command lines and tools to compute placement hints

atlas-splitter

Last released

CLI to split atlas regions and modify annotations accordingly

tmd

Last released

TMD: a python package for the topological analysis of neurons

atlas-commons

Last released

Library containing common functions to build atlases

cgal-pybind

Last released

Python bindings for some CGAL classes

diameter-synthesis

Last released

Diametrize cells

MorphIO

Last released

A neuron morphology IO library

NeuroTS

Last released

Synthesis of artificial neurons using their topological profiles package

EModelRunner

Last released

Runs cells from Blue Brain Project cell packages, such as sscx, synapse plasticity, etc.

bluepysnap

Last released

Simulation and Neural network Analysis Productivity layer

brion

Last released

BlueBrain I/O Library

dir-content-diff

Last released

Simple tool to compare directory contents.

morphology-workflows

Last released

Workflows used for morphology processing.

morph-tool

Last released

A collection of CLIs and python function related to morphology handling

plotly-helper

Last released

Package that makes plotly easy

brayns

Last released

The Brayns renderer python API

rockets

Last released

Rockets python client

basalt

Last released

Graph API powered by RocksDB persistent key-value store for fast storage

flake8-oist-steps

Last released

Check usage STEPS subcellular simulator

hpcbench

Last released

Specify and run your benchmarks

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