atlas-direction-vectors

Last released May 18, 2022

Commands to compute direction vectors in volumetric brain regions. Direction vectors are 3D unit vectors associated to voxels of a brain region. They represent the directions of the fiber tracts.

voxcell

Last released May 11, 2022

Voxcell is a small library to handle probability distributions that have a spatial component and to use them to build collection of cells in space.

neurom

Last released May 6, 2022

NeuroM: a light-weight neuron morphology analysis package

NeuroR

Last released Apr 20, 2022

A morphology repair tool

nexusforge

Last released Apr 14, 2022

Building and Using Knowledge Graphs made easy.

libsonata

Last released Apr 11, 2022

SONATA files reader

vascpy

Last released Apr 7, 2022

Vasculature API

bluegraph

Last released Apr 7, 2022

Knowledge Graphs analytics.

bioexplorer

Last released Apr 4, 2022

Python API for the Blue Brain BioExplorer

sphinx-bluebrain-theme

Last released Mar 28, 2022

Blue Brain Project theme for Sphinx

data-validation-framework

Last released Mar 18, 2022

Simple framework to create data validation workflows.

luigi-tools

Last released Mar 17, 2022

Tools to work with luigi

atlas-densities

Last released Mar 10, 2022

Library containing command lines and tools to compute volumetric cell densities in the rodent brain

atlas-placement-hints

Last released Mar 10, 2022

Library containing command lines and tools to compute placement hints

atlas-splitter

Last released Mar 10, 2022

CLI to split atlas regions and modify annotations accordingly

tmd

Last released Mar 9, 2022

TMD: a python package for the topological analysis of neurons

atlas-commons

Last released Mar 9, 2022

Library containing common functions to build atlases

cgal-pybind

Last released Mar 8, 2022

Python bindings for some CGAL classes

diameter-synthesis

Last released Mar 3, 2022

Diametrize cells

MorphIO

Last released Mar 3, 2022

A neuron morphology IO library

NeuroTS

Last released Mar 2, 2022

Synthesis of artificial neurons using their topological profiles package

EModelRunner

Last released Mar 1, 2022

Runs cells from Blue Brain Project cell packages, such as sscx, synapse plasticity, etc.

bluepysnap

Last released Feb 15, 2022

Simulation and Neural network Analysis Productivity layer

brion

Last released Jan 31, 2022

BlueBrain I/O Library

dir-content-diff

Last released Jan 21, 2022

Simple tool to compare directory contents.

morphology-workflows

Last released Jan 12, 2022

Workflows used for morphology processing.

morph-tool

Last released Aug 30, 2021

A collection of CLIs and python function related to morphology handling

plotly-helper

Last released Aug 30, 2021

Package that makes plotly easy

brayns

Last released Feb 19, 2021

The Brayns renderer python API

rockets

Last released Jun 8, 2020

Rockets python client

basalt

Last released Feb 19, 2020

Graph API powered by RocksDB persistent key-value store for fast storage

flake8-oist-steps

Last released Dec 2, 2019

Check usage STEPS subcellular simulator

hpcbench

Last released Apr 25, 2019

Specify and run your benchmarks