33 projects
atlas-direction-vectors
Commands to compute direction vectors in volumetric brain regions. Direction vectors are 3D unit vectors associated to voxels of a brain region. They represent the directions of the fiber tracts.
voxcell
Voxcell is a small library to handle probability distributions that have a spatial component and to use them to build collection of cells in space.
neurom
NeuroM: a light-weight neuron morphology analysis package
NeuroR
A morphology repair tool
nexusforge
Building and Using Knowledge Graphs made easy.
libsonata
SONATA files reader
vascpy
Vasculature API
bluegraph
Knowledge Graphs analytics.
bioexplorer
Python API for the Blue Brain BioExplorer
sphinx-bluebrain-theme
Blue Brain Project theme for Sphinx
data-validation-framework
Simple framework to create data validation workflows.
luigi-tools
Tools to work with luigi
atlas-densities
Library containing command lines and tools to compute volumetric cell densities in the rodent brain
atlas-placement-hints
Library containing command lines and tools to compute placement hints
atlas-splitter
CLI to split atlas regions and modify annotations accordingly
tmd
TMD: a python package for the topological analysis of neurons
atlas-commons
Library containing common functions to build atlases
cgal-pybind
Python bindings for some CGAL classes
diameter-synthesis
Diametrize cells
MorphIO
A neuron morphology IO library
NeuroTS
Synthesis of artificial neurons using their topological profiles package
EModelRunner
Runs cells from Blue Brain Project cell packages, such as sscx, synapse plasticity, etc.
bluepysnap
Simulation and Neural network Analysis Productivity layer
brion
BlueBrain I/O Library
dir-content-diff
Simple tool to compare directory contents.
morphology-workflows
Workflows used for morphology processing.
morph-tool
A collection of CLIs and python function related to morphology handling
plotly-helper
Package that makes plotly easy
brayns
The Brayns renderer python API
rockets
Rockets python client
basalt
Graph API powered by RocksDB persistent key-value store for fast storage
flake8-oist-steps
Check usage STEPS subcellular simulator
hpcbench
Specify and run your benchmarks